GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002296-TA|BGIBMGA002296-PA|undefined
         (199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.37 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 14/91 (15%), Positives = 32/91 (35%)

Query: 13  EGGGYGCGGTHRAASEKGAATYARTEESQRGGGILNGNTTEGEDGKPGKPXXXXXXXXXX 72
           +G G+G GG+      +G   +    +          N    +D +  +           
Sbjct: 82  KGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFAAREDN 141

Query: 73  TKSAGKEPREGDAKPRRPKRQRPVIDFSVKI 103
            +   ++P+E    P  P  ++ + +  V+I
Sbjct: 142 DEEEAQKPKEQYIPPELPNDEKSLFENGVEI 172


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 28  EKGAATYARTEESQRGGGILNGNTTEGEDG 57
           E+ A  ++   ++Q GG   NG    G DG
Sbjct: 464 EEAACRFSAVAQAQLGGERQNGRKDSGYDG 493


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 158 GSGDGDAEDKPR 169
           GSGDGD E  P+
Sbjct: 336 GSGDGDTEISPQ 347


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 112 VRDLKQALSERGVKPQIMVWKGE 134
           V D  +A  ERG+   I +WK E
Sbjct: 59  VLDKLKAERERGITIDIALWKFE 81


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 112 VRDLKQALSERGVKPQIMVWKGE 134
           V D  +A  ERG+   I +WK E
Sbjct: 2   VLDKLKAERERGITIDIALWKFE 24


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 112 VRDLKQALSERGVKPQIMVWKGE 134
           V D  +A  ERG+   I +WK E
Sbjct: 59  VLDKLKAERERGITIDIALWKFE 81


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,273
Number of Sequences: 429
Number of extensions: 2171
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 199
length of database: 140,377
effective HSP length: 55
effective length of query: 144
effective length of database: 116,782
effective search space: 16816608
effective search space used: 16816608
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 42 (21.0 bits)