GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002295-TA|BGIBMGA002295-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (270 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.34 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   3.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   5.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 232 VIETQRMSQRPTGILWHLLSNRRLQ 256
           V++ +   ++P GILW+ ++N+RL+
Sbjct: 815 VLQCEAKGEKPIGILWN-INNKRLE 838


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 18  DNTKKPLPEEVTKQSYRVKVWRHLETNGLAVFPRPVYNRIPNFKGAQEAAAKLAELDVFK 77
           D    PLP   TK +  ++ + H+E+     F  P   R+     +     KL   ++  
Sbjct: 68  DTASLPLPGLYTKSANTIRSFTHVESPIDEKFVHPHRFRLKFNISSIPRHEKLTAAEIKL 127

Query: 78  NANTVKVNPDKPQEPVRVICLEQQ--KTLYVPVPRL 111
              T K N   P + V V  + Q   K L+ P+ R+
Sbjct: 128 TRETAK-NTSHPFQRVLVHDILQPGVKGLHGPITRV 162


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 233 IETQRMSQRPTGILWHLLSNRRLQLMPILGQL 264
           I+T +++ R    L+H+LSN     + ++G +
Sbjct: 134 IQTLKLAARYIDFLYHVLSNENALDVDLIGNV 165


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 14   PTAVDNTKKPLPEEVTKQSYRVKV 37
            P    + K PLPEE+  QS   K+
Sbjct: 1377 PIPPTSEKPPLPEELKPQSGYFKI 1400


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 37  VWRHLETNGLAVFPRPVYNRI 57
           VWR + T  + V+PR V N I
Sbjct: 165 VWREVCTFVVQVYPRLVVNTI 185


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,526
Number of Sequences: 317
Number of extensions: 2659
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 270
length of database: 114,650
effective HSP length: 56
effective length of query: 214
effective length of database: 96,898
effective search space: 20736172
effective search space used: 20736172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)