GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002295-TA|BGIBMGA002295-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    33   0.057
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    29   0.71 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   1.6  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    27   2.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   3.8  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   3.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.0  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    26   6.6  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   8.7  

>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 69  KLAELDVFKNANTVKVNPDKPQEPVRVICL-----EQQKTLYVPVPRLQTGFLNRLELPE 123
           ++ EL  +K    V +  + P++ VR  CL     ++ K +++P   + +  +   ++ E
Sbjct: 34  QVVELPEWKRCKNVCLYMNMPKKEVRTRCLIDVAFKEGKNVFIP-KCIGSHVMEMYQVFE 92

Query: 124 GETGPAAIRK-AVSRNGMETYGKPIGIEDTVSLDLVVMGSVAVSKEGYRIGKGRGYGDLE 182
            +T    I K  ++    E+  + I ++D    +L+++  VA  ++  R+G G+GY D  
Sbjct: 93  -KTESLTINKWGIAEPNGES--RKI-MDDETDCELIIVPGVAFDEKLSRLGHGKGYYDNY 148

Query: 183 FGLMMHMKAIKPDTVVVTTVHDCQVFDTLP-AEL-FGPHDVPIDIIVTPTQVI 233
                     K     +  V  C     LP  E+     D  +D +VTP +VI
Sbjct: 149 ISKYQSWALQKESRANMFKVGICLKEQILPNREIPMDTRDQKLDALVTPEKVI 201


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 22  KPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 53
           +P+P  VTK  +  K W+H E      FPRPV
Sbjct: 377 RPVPHNVTKPDH--KPWKHEEHCHHGKFPRPV 406



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 18  DNTKKPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 53
           D   +P+P   TK  +  K W+H E      FPRPV
Sbjct: 178 DKFPRPVPHNGTKPDH--KPWKHEEHCHHGKFPRPV 211



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 18  DNTKKPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 53
           D   +P+P   TK  +  K W+H E      FPRP+
Sbjct: 263 DKFPRPVPHNGTKPDH--KPWKHEEHCHHGKFPRPI 296



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 22  KPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 53
           +P+P   TK  +  K W+H E      FPRPV
Sbjct: 294 RPIPHNGTKPDH--KPWKHEEHCHHGRFPRPV 323


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 55  NRIPNF--KGAQEAAAKLAELDVFKNANTVKVNPDKPQE 91
           N+ P F   GA+   ++L ELD++KN       P KP E
Sbjct: 219 NQRPTFLGMGAKPVDSELTELDIWKNPKKTMFLPVKPLE 257


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 103 TLYVPVPRLQTGFLNRLELPEGETGP 128
           T+ VP+P + T FL+ L  P+  TGP
Sbjct: 674 TVPVPLPSIITEFLDELPAPQVITGP 699


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 235 TQRMSQRPTGILWHLLSN 252
           T R+ Q PTG+LWH   N
Sbjct: 203 TVRVLQDPTGVLWHSFVN 220


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 221 VPIDIIVTPTQ--VIETQRMSQRPTGILWHLLSNRRLQLMP 259
           VPID   TP    ++E  R  ++    L+H+  NR L  +P
Sbjct: 68  VPIDTTPTPRDEILLENVRTVRKQRSSLYHISENRNLVRLP 108


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 195 DTVVVTTVHDCQVFDTLPAELFGPHDVPIDIIVTPTQVIETQRMSQR 241
           D   +  VH  + F  +  E     D+PI +I+ PT +I  +   +R
Sbjct: 260 DETFIFDVHRAKEFQIIIYEKKKDFDIPIALILIPTTIIAEELRRKR 306


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 94  RVICLEQQK-TLYVPVPR---LQTGFLNRLELPEGETGPAAIRKAV 135
           R + L+  K + Y P P    L TGF NR   P+ +  P +I K V
Sbjct: 33  RELLLDDSKLSYYYPPPLFSDLNTGFPNRFHPPKSDPDPISIVKDV 78


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 51  RPVYNRIPNFKGAQEAAAK-LAELDVFKNANTVKVNPDKPQEP 92
           RPV  R  N + A++     L E+D  ++ NT  V  D PQEP
Sbjct: 596 RPVSERY-NEQIAEDVLCDILDEIDYAEDPNTSSVTIDVPQEP 637


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,606
Number of Sequences: 5004
Number of extensions: 52976
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 12
length of query: 270
length of database: 2,362,478
effective HSP length: 72
effective length of query: 198
effective length of database: 2,002,190
effective search space: 396433620
effective search space used: 396433620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)