GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002295-TA|BGIBMGA002295-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (270 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   216   1e-56
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    32   0.56 
02_05_0637 + 30543158-30543895                                         29   5.2  
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857...    29   5.2  
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865...    28   6.9  
07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547     28   9.1  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  216 bits (528), Expect = 1e-56
 Identities = 116/262 (44%), Positives = 161/262 (61%), Gaps = 4/262 (1%)

Query: 5   AKMQNGDGTPTAVDNTKKPLPEEVTKQSYRVKVWRHLETNGLAVFPRPVYNRIPNFKGAQ 64
           A+ + G  +  AV   +   P+   K + R +VW  LE  G+A  PRPV++RIPNF GA 
Sbjct: 467 AEARAGMASAAAVAGAEAADPK-AWKWAIRKRVWDALEAEGVARDPRPVHHRIPNFDGAA 525

Query: 65  EAAAKLAELDVFKNANTVKVNPDKPQEPVRVICLEQQKTLYVPVPRLQTGFLNRLELPEG 124
            AA  L  LDVF++A  VKVNPD PQ+ VR + L   K L  P PRL+TGF + LE    
Sbjct: 526 AAADSLGRLDVFQDAQCVKVNPDSPQKQVRFLTLSGDKKLLTPQPRLRTGFFSVLESHMI 585

Query: 125 ETGPAAIRKAVSRNGMETYGKPIGIEDTVSLDLVVMGSVAVS-KEGYRIGKGRGYGDLEF 183
             G   I +A +  G   YG+PIG+++ + +DL+V+GSVAV    G R+GKG G+ +LE+
Sbjct: 586 PIG--CIPEACTSVGAAKYGRPIGLDEKIKVDLIVIGSVAVDPSTGARLGKGEGFAELEY 643

Query: 184 GLMMHMKAIKPDTVVVTTVHDCQVFDTLPAELFGPHDVPIDIIVTPTQVIETQRMSQRPT 243
           G++ +M +I   T++VTTVHD Q+ + +P E    HDVP+DII TPTQVI T     +P 
Sbjct: 644 GMLRYMGSISDSTMIVTTVHDKQLVNDIPVEKLLVHDVPVDIICTPTQVIFTNTTIAKPQ 703

Query: 244 GILWHLLSNRRLQLMPILGQLR 265
           GI W  LS  +L  + IL +L+
Sbjct: 704 GIYWEKLSPEKLGQIRILQELK 725


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 24  LPEEVTKQSYRVKVWRHLETNGLAVFPRPVYNRIPNFKG--AQEAAAK 69
           L E++T    R  V R +++NG+A F   +++  PN  G  AQEA A+
Sbjct: 87  LTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNVGGAWAQEATAQ 134


>02_05_0637 + 30543158-30543895
          Length = 245

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 61  KGAQEAAAKLAELDVFKNANTVKVNPDKP 89
           K A EAAAK+ EL     A +  V P++P
Sbjct: 161 KDASEAAAKIMELCAAAGAKSASVTPERP 189


>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
            28085948-28086253,28086369-28086643,28087034-28087252,
            28087486-28089015,28089236-28089397,28089512-28089666,
            28090195-28091064,28091363-28091832,28091917-28091981,
            28092105-28092448,28092531-28092710,28092817-28092920,
            28093053-28093162,28093648-28093744,28094138-28094238,
            28094324-28094476,28094561-28094674,28094795-28094884,
            28094960-28095307
          Length = 2157

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 48   VFPRPVYNRIPNFKGAQEAAAKLAELDVFKN---ANTVKVNPDK-PQEPVRV 95
            VFPR  Y R+ +   A++AAAKLA+     N     T KV P++    P RV
Sbjct: 1595 VFPRD-YKRVLDNMKAEKAAAKLAKEPKISNGVSVTTKKVQPEQSTNRPTRV 1645


>03_02_0842 +
           11682332-11683802,11683858-11683940,11684751-11686553,
           11687783-11688633,11689230-11689299,11689597-11689641
          Length = 1440

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 101 QKTLYVPVPRLQTGFLNRLE----LPEGETGPAAIRKAVSRNGMETYGKP 146
           QK L  PVP L +  L+R +       G    AAIR AV+ NG+ T  KP
Sbjct: 16  QKKLGAPVP-LHSFLLSRRQPAAGAGRGRAAAAAIRCAVAGNGLFTQTKP 64


>07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547
          Length = 690

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/36 (41%), Positives = 16/36 (44%)

Query: 170 YRIGKGRGYGDLEFGLMMHMKAIKPDTVVVTTVHDC 205
           Y  G  R Y  L+    M MK   PD V  TTV  C
Sbjct: 299 YLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSC 334


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,246,434
Number of Sequences: 37544
Number of extensions: 359380
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 6
length of query: 270
length of database: 14,793,348
effective HSP length: 81
effective length of query: 189
effective length of database: 11,752,284
effective search space: 2221181676
effective search space used: 2221181676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)