GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002295-TA|BGIBMGA002295-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (270 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily ass...    31   1.2  
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    31   1.2  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    31   1.2  
AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical ...    31   1.2  
U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z79753-2|CAB02087.1|  249|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform d protein.
          Length = 799

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 194 PDTVVVTTVHDCQVFDTLPAELFGPHDVP-IDIIVTPTQVIETQRMSQRPTGI 245
           P    +T V D Q+ D   ++ F  HD P    ++TP Q+ + Q+  Q+P+ I
Sbjct: 441 PQVTSITNVRDSQLTDYDISD-FHAHDEPHYHTVLTPQQLQQNQQQHQQPSAI 492


>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 194 PDTVVVTTVHDCQVFDTLPAELFGPHDVP-IDIIVTPTQVIETQRMSQRPTGI 245
           P    +T V D Q+ D   ++ F  HD P    ++TP Q+ + Q+  Q+P+ I
Sbjct: 441 PQVTSITNVRDSQLTDYDISD-FHAHDEPHYHTVLTPQQLQQNQQQHQQPSAI 492


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 194 PDTVVVTTVHDCQVFDTLPAELFGPHDVP-IDIIVTPTQVIETQRMSQRPTGI 245
           P    +T V D Q+ D   ++ F  HD P    ++TP Q+ + Q+  Q+P+ I
Sbjct: 441 PQVTSITNVRDSQLTDYDISD-FHAHDEPHYHTVLTPQQLQQNQQQHQQPSAI 492


>AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical
           protein Y106G6E.4 protein.
          Length = 206

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 151 DTVSLDLVVMGSVAVSKEGYRIGKGRGYGDLEFGL-MMHMKAIKPDTVVVTTVHDCQVFD 209
           +T  LDL++   VA S  G R G G+GY D  F     H     P  + +      Q+  
Sbjct: 123 ETGPLDLILAPGVAFSPYGLRCGHGKGYYDRFFSTHHKHFPENSPKKIGLALRE--QIIG 180

Query: 210 TLPAELFGPHDVPIDIIVTPTQVI 233
           T+P       DV +D ++   + I
Sbjct: 181 TIP---ISETDVELDEVIYEGETI 201


>U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical
           protein C56G2.4 protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 28  VTKQSYRVKVWRHLETNGLAVFPRPVYNRIPNFKGAQEAAAKLAELDVFK-NANTVKVNP 86
           +  + +RVK +       L +FPR  Y   P    A        E D F  N + V+ +P
Sbjct: 71  IASRLFRVKTYHSAYLRNLYIFPRVTYRASPGHYRA-------CEHDFFSGNTSAVQADP 123

Query: 87  D-KPQEPVRV 95
           D  P EP R+
Sbjct: 124 DMDPVEPFRI 133


>Z79753-2|CAB02087.1|  249|Caenorhabditis elegans Hypothetical
           protein F20G2.2 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 2   AEIAKMQNGDGTPTAVDNTKKPLPEEVTKQSYRVKVWRHLETNGLA 47
           AE+ K+   DG    ++N    LP +V  +  R  + R LETN ++
Sbjct: 71  AEVEKLVGEDGLTVLLNNAGILLPYDVEGEKNRKTLIRQLETNSVS 116


>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
          protein H21P03.3b protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 5  AKMQNGDGTPTAVDNTKKPLPEEVTKQSYRVKVWRHLETNGLA 47
          AKMQ+ +G     +N++    E+V KQ     V  H ET+G+A
Sbjct: 53 AKMQDDNGDEEKAENSEGAAAEKVEKQHDDDGVVVHEETDGVA 95


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,858,806
Number of Sequences: 27539
Number of extensions: 303172
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 7
length of query: 270
length of database: 12,573,161
effective HSP length: 80
effective length of query: 190
effective length of database: 10,370,041
effective search space: 1970307790
effective search space used: 1970307790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)