GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002295-TA|BGIBMGA002295-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (270 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    26   0.31 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.54 
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   2.2  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   2.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.1  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   6.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.7  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   8.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 93  VRVICLEQQKTLYVPVPRLQTG 114
           V V   EQQ T++V +PR+Q G
Sbjct: 62  VDVYNTEQQSTVFVAIPRIQDG 83


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 232 VIETQRMSQRPTGILWHLLSNRRL 255
           V++ +   ++P GILW+ ++N+RL
Sbjct: 795 VLQCEAQGEKPIGILWN-MNNKRL 817


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 135 VSRNGMETYGKPIGIEDTVSLDLVVMGSVAVSKEG 169
           VS+N  E + K +G ++ V+  L    S  +SK G
Sbjct: 9   VSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSKNG 43


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 135 VSRNGMETYGKPIGIEDTVSLDLVVMGSVAVSKEG 169
           VS+N  E + K +G ++ V+  L    S  +SK G
Sbjct: 11  VSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSKNG 45


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 182 EFGLMMHMKAIKPDTVVVTTVHDCQVFDTLPAEL 215
           E   M+  K ++    + TTVH   + +T+P EL
Sbjct: 306 EVNYMLKAKNMENRFPLFTTVHRICIGETMPMEL 339


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 51  RPVYNRIPNFKGAQEAAAKLAELDVFKNANT-VKVNPDKPQEPVRVICLEQQ------KT 103
           RPVY  IP  +       + AEL+     N  V ++  +P  P      E +      + 
Sbjct: 129 RPVY--IPQPRPPHPRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRP 186

Query: 104 LYVPVPRLQTGFLNRLELPEGETG 127
           +Y+P PR     L R   PE E G
Sbjct: 187 VYIPQPRPPHPRLRREAEPEAEPG 210


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 176 RGYGDLEFGLMMHMKAIKPDTVVVTTVHDCQVFDTLPAELFGPHDVPIDI 225
           RG  ++  G ++ M+ +K +   + T ++C +    P   F P D  I I
Sbjct: 626 RGNENIYSGKLISMRHLKEEVSSIETNYECGLRFEDPMISFQPGDTIICI 675


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 128 PAAIRKAVSR--NGMETYGKPIGIEDTVSLDLVVMGSVAVSKEGY 170
           P+ +R   SR  N   T+G P   +  +  +++  G+ A+SK  Y
Sbjct: 214 PSDLRTIYSRVRNLNRTHGFPNDAQPYIFQEVIDYGNEAISKREY 258


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 102 KTLYVPVPRLQTGFLNRLELPEGETG 127
           + +Y+P PR     L R   PE E G
Sbjct: 129 RPVYIPQPRPPHPRLRREAKPEAEPG 154


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 142 TYGKPIGIEDTVSLDLVVMGSVAVS 166
           T G    ++DTV L   V GSVA++
Sbjct: 179 TNGCVEALKDTVKLAGTVFGSVAIA 203


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,593
Number of Sequences: 429
Number of extensions: 3347
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 17
length of query: 270
length of database: 140,377
effective HSP length: 57
effective length of query: 213
effective length of database: 115,924
effective search space: 24691812
effective search space used: 24691812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)