GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002294-TA|BGIBMGA002294-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation, IPR001646|Pentapeptide repeat
         (397 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    24   1.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   5.1  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    23   5.1  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    23   5.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   5.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   5.1  

>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 110 TLQSKEPLSMLARMFADDNNM----YLMNPSATDSRGAYLIDRSPEYF 153
           TL+   P+ ++ R+  ++  +    Y +    T   G +L+ R+P+YF
Sbjct: 55  TLRMYPPVPIITRVINEEVKLASGDYTLPVGTTVGIGQFLVHRNPKYF 102


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 326 SNMSGVNLRVATLKNANLQNCDLRTAVLAGADLECCDLS 364
           +++SGVNL       ++L N D +   L   DL   DLS
Sbjct: 463 NDLSGVNLSETPSGISSLLNLDNQQLELKPIDLNSGDLS 501


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 124 FADDNNMYLMNPSATDSRGAYLIDRSPEYFEPILNY 159
           F +   +Y +N    ++  A L D   EY  PIL Y
Sbjct: 319 FTNSEGLYAINEIYDNALLALLDDYWNEYIPPILYY 354


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 124 FADDNNMYLMNPSATDSRGAYLIDRSPEYFEPILNY 159
           F +   +Y +N    ++  A L D   EY  PIL Y
Sbjct: 319 FTNSEGLYAINEIYDNALLALLDDYWNEYIPPILYY 354


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 35  FEIGGDFRLFTENGCEIVDVRVIRDDEKLYVNCGDSKSC---DTIESSLAKLSLNRCSEV 91
           F  G  + +F  +GC     R IR + +      D  SC    T  +      L +C  V
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNV 103

Query: 92  ---SDWITLNVGGRYFTTSRSTLQS 113
               D +    G R  T  R  + S
Sbjct: 104 GMNKDAVQHERGPRNSTLRRQQMSS 128


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 35  FEIGGDFRLFTENGCEIVDVRVIRDDEKLYVNCGDSKSC---DTIESSLAKLSLNRCSEV 91
           F  G  + +F  +GC     R IR + +      D  SC    T  +      L +C  V
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNV 103

Query: 92  ---SDWITLNVGGRYFTTSRSTLQS 113
               D +    G R  T  R  + S
Sbjct: 104 GMNKDAVQHERGPRNSTLRRQQMSS 128


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,770
Number of Sequences: 317
Number of extensions: 3492
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 397
length of database: 114,650
effective HSP length: 58
effective length of query: 339
effective length of database: 96,264
effective search space: 32633496
effective search space used: 32633496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)