GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002294-TA|BGIBMGA002294-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation, IPR001646|Pentapeptide repeat
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    29   1.5  
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    27   6.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   6.1  

>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 51  IVDVRVIRDDEKLYVNCGDSKSCDTIESSLAKLSLNRCSEVSDWITLN--VGGRYFTTSR 108
           ++D+  +  D ++ ++ GD K  ++I S+L++L  +     S+W+ ++     RY   +R
Sbjct: 160 LIDIANVNSDRQIVLS-GDKKELESITSTLSELVRSLGKLRSNWLDVSGAFHSRYMLPAR 218

Query: 109 STLQS 113
            +L++
Sbjct: 219 DSLKN 223


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 142 GAYLIDRSPEYFEPILNYLRHGEVIIDKYV 171
           G  LI R  E  +P+L+Y++  E I  +YV
Sbjct: 105 GKILIQRDEETHKPVLHYIKLPEDISKRYV 134


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 127 DNNMY-LMN--PSATDSRGAYLIDRSPEYFEPILNYLRHGEVIIDKYVNPRGVLEE 179
           +NN+Y ++N  P  ++++   +I +SP+  E I  YL+  + I+  +V P   LEE
Sbjct: 516 NNNVYKILNIFPFKSETKRMGIIVQSPD--EKITFYLKGADSIMQNFVKPSFWLEE 569


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,908
Number of Sequences: 5004
Number of extensions: 71038
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 3
length of query: 397
length of database: 2,362,478
effective HSP length: 74
effective length of query: 323
effective length of database: 1,992,182
effective search space: 643474786
effective search space used: 643474786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)