GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002294-TA|BGIBMGA002294-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation, IPR001646|Pentapeptide repeat
         (397 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    26   1.6  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   2.8  
AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    24   8.4  

>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 23  TLEAFKLEISNVFEIGGDFRLFTENG-CEIVDVRVIRDDEKLYVNC 67
           T + F+L++    E GGD   F  NG  E++ V   R++  +Y NC
Sbjct: 153 TYDGFQLDLQLQDESGGDISSFITNGEWELLGVPGKRNE--IYYNC 196


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 23  TLEAFKLEISNVFEIGGDFRLFTENG-CEIVDVRVIRDDEKLYVNC 67
           T + F+L++    E GGD   F  NG  +++ V   R++  +Y NC
Sbjct: 185 TYDGFQLDLQLQDEAGGDVSSFVTNGEWDLLGVPGKRNE--IYYNC 228


>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 239 NRLDLRFIN--FKYAFLSRCNLSGANLSYCCLERADLSHANLEGAQLLGVKALCANMEGA 296
           N +   F+N  F+ AFL   +     +  CC      S+  +EGA+      L  N    
Sbjct: 519 NPITYCFMNRRFRQAFLGVFSCYRNRMPICCCFCCASSNGPMEGAESKAAAYLRQNTINQ 578

Query: 297 NLKGCNMDDPHGNKALM 313
           +    N  D  GN +L+
Sbjct: 579 SGAERNNSDMSGNDSLV 595


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,177
Number of Sequences: 2123
Number of extensions: 15849
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 397
length of database: 516,269
effective HSP length: 65
effective length of query: 332
effective length of database: 378,274
effective search space: 125586968
effective search space used: 125586968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)