GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002294-TA|BGIBMGA002294-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation, IPR001646|Pentapeptide repeat
         (397 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.85 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   2.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.85
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 23  TLEAFKLEISNVFEIGGDFRLFTENG-CEIVDVRVIRDDEKLYVNC 67
           T + F+L++    E GGD   F  NG  +++ V   R++  +Y NC
Sbjct: 170 TYDGFQLDLQLQDEAGGDISSFITNGEWDLLGVPGKRNE--IYYNC 213


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 132 LMNPSATDSRGAYLIDRSPEYFEPILNYLRHGEVIIDKYVNPRGVLEEAVFYGIDSMIPH 191
           L NP+     G +  ++S +YFE  LN L      ++K V  +  + E     I + +  
Sbjct: 28  LNNPTLFMIGGVFSNNKSKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIKTALSV 87

Query: 192 IQKIIE 197
            + +IE
Sbjct: 88  CKSLIE 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,725
Number of Sequences: 429
Number of extensions: 3959
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 397
length of database: 140,377
effective HSP length: 59
effective length of query: 338
effective length of database: 115,066
effective search space: 38892308
effective search space used: 38892308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)