GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002293-TA|BGIBMGA002293-PA|undefined
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    33   0.070
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    31   0.50 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    31   0.50 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   1.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    29   2.0  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    28   2.6  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    28   2.6  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   4.6  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   6.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   6.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   8.1  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 33.5 bits (73), Expect = 0.070
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 404 LSSLQYYANQKNLINMNNAVMNMKLCNGTLHELFDVERKLLVVMSQYYGNDTIEEYINAK 463
           L   Q Y   KN I    A  N      + HE     ++L+  +S+ YG   + E    +
Sbjct: 446 LKEEQSYYGLKNSIKQIKAFENKLKYIQSFHEK---HQQLIGALSEVYGLTHLTELEILE 502

Query: 464 MLHLKRKLEGSMKIFKDLMGIRAFETSLKHLK-WDS 498
            L+ K  +   + +FKDL  +   + SLK +  W+S
Sbjct: 503 HLNKKEHVFNILTVFKDLQSLNVLDISLKGVNAWNS 538


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 106 YDKIELQRFLRGAIELGFEIIPLIQTFGHMEFVLKQKEFYHLREDPTYP 154
           + K ++Q  L+      F++  LI  +  M F +   EF++ +++P YP
Sbjct: 476 HKKFDVQNVLKNDSGYWFQLQLLIDVYSRMLFTMIDDEFHNDKQNPLYP 524


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 377 CELYNYLSEFLKIHENVIYYFESEKHGLSSLQYYANQKNLINMNNAVMNMKL 428
           C + N  SEFL++   +    +S +H + SL +Y N  N +N+   V+ ++L
Sbjct: 219 CVVINKDSEFLQMCRPINTTQDSNEHSIGSLFFYLNY-NFVNVKRQVIYLEL 269


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 216 YWDYGANSS--VSHVNLLKYHRKFDNIWIATAFK--GADGRLST--IPNLKNR 262
           YW   A S+  V H + L Y R+F N+++  AF   G DG + +    NL+NR
Sbjct: 947 YWSSIALSTAHVQHGDTLNYSRQFPNLFVQGAFNRFGYDGSMPSKMSYNLENR 999


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 223 SSVSHVNLLKYHRKF---DNIWIATAFKGADGRLSTI 256
           S +SH NL++Y+  F   +NIW    +K    +LS +
Sbjct: 438 SGLSHKNLIRYNESFWYLNNIWSVFEYKDPSTKLSAL 474


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 202 SWNEIGYFNKIQTVYWDYGANSSVSHV 228
           S NE+ +FN++   +WD+   S + H+
Sbjct: 31  SVNEVDHFNELAKTWWDWDGGSRLLHL 57


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 214 TVYWDYGANSSVSH-VNLLKYHRKFDNIWIATAFKGADGRLSTIPNLKNRFLNHLSWLKL 272
           TV W    N  ++  + L K      +++  T+   ++GR S I    N + +H S +K 
Sbjct: 709 TVCWTASPNHEINDWIGLYKLSDNASDLYTQTS---SEGRWSAID--ANGYTSHCSSIKS 763

Query: 273 IANYKFGGETNF 284
           ++N K  GE  F
Sbjct: 764 LSNDKNSGEVEF 775


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 200 LKSWN-EIGYFNKIQTVYWDYGANSSVSHVNLLKYHRKFDNIW 241
           L +W  E G+F K+ +++ D   + S+  + +++     D IW
Sbjct: 28  LNNWKKEPGFFGKLYSIFLDKQNDMSLRWIAIIQLRNSIDIIW 70


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 389 IHENVIYYFESEKHGLSSLQYYANQKNLI 417
           +HE VIY F SE   +    + ++QKN +
Sbjct: 223 LHEPVIYDFSSENPSIHPSNHLSSQKNAV 251


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 388  KIHENVIYY-FESEKHGLSSLQYYANQKNLINMNNAVMNMKLC 429
            ++ E + Y+ F   KH    L Y   +   +N+   V+ +K+C
Sbjct: 1021 RVQEGICYHLFSKFKHDTQFLSYQTPEILRLNLQEVVLRVKMC 1063


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 390 HENVIYYFESEKHGLSSLQYYANQKNLINMNNAVMNMKLCNGTLHE---LFDVERKLL-- 444
           HE+V  +  +E   LSS   +A+ +    + + + N+ L  GT  +   L  V   LL  
Sbjct: 552 HEDVDSFMSNESSILSSFNEFASNEVGRLLESTIQNILLAKGTEKQKVKLIKVFNSLLQR 611

Query: 445 VVMSQYYGNDTIEEYINAKM 464
           ++++    N++ E+ + A +
Sbjct: 612 ILLNSKVSNESFEDSLQASL 631


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 6   KIRIVKLKCFLLITIILSVYVFVSYL--FLEIRY 37
           K R +   C L+ T  +S Y+F ++L  FL++ Y
Sbjct: 348 KDRTILGSCVLIFTYFMSYYIFSNFLTSFLQVSY 381


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,965
Number of Sequences: 5004
Number of extensions: 113522
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 15
length of query: 504
length of database: 2,362,478
effective HSP length: 76
effective length of query: 428
effective length of database: 1,982,174
effective search space: 848370472
effective search space used: 848370472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)