GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002293-TA|BGIBMGA002293-PA|undefined
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0585 + 30155021-30155910,30156130-30157006                       32   1.2  
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404...    29   6.6  
02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741...    29   8.7  

>02_05_0585 + 30155021-30155910,30156130-30157006
          Length = 588

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 140 KQKEFYHLREDPTYPDSICPTKIESQMLIKEMLIQIKQIVE 180
           +QK  +HL+E      + CPT++  +M+ + +  Q K++VE
Sbjct: 62  EQKPNHHLKESVDVSSAKCPTEVSEEMVSEGIASQEKKVVE 102


>03_01_0538 -
           4038954-4039444,4040172-4040248,4040838-4040911,
           4041115-4041203,4041481-4041563,4041645-4042233,
           4042915-4043101
          Length = 529

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 199 KLKSWNEIGYFNKIQTVYWDYGANSSVSHVNLLKYHRKFD 238
           KL+ +  + Y NK  +  +   ++SS  H + +KYH   D
Sbjct: 73  KLEDFMSVSYSNKSSSNLYGSSSSSSCGHADQIKYHHVHD 112


>02_02_0498 -
           10973243-10973345,10973850-10973882,10974104-10974166,
           10975934-10976004,10976703-10976789,10976870-10976983,
           10977395-10977508,10977784-10977844,10978608-10978923,
           10979031-10979721,10979948-10980073,10980180-10980247,
           10980314-10980449,10981109-10981238,10981266-10981382,
           10981614-10981763,10982158-10982266,10982584-10982701,
           10984143-10984168,10984219-10984256,10986267-10986373
          Length = 925

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 161 KIESQMLIKEMLIQIKQIVEDINPETTVLIWDDMFRSI 198
           K++S +L K  ++ IKQ ++D+  E    +W+ +  ++
Sbjct: 73  KVQSMLLHKHRILDIKQHLQDLGKENGPKLWEYILHTV 110


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,443
Number of Sequences: 37544
Number of extensions: 581177
Number of successful extensions: 1089
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 3
length of query: 504
length of database: 14,793,348
effective HSP length: 85
effective length of query: 419
effective length of database: 11,602,108
effective search space: 4861283252
effective search space used: 4861283252
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)