GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002293-TA|BGIBMGA002293-PA|undefined
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)              45   2e-04
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.23 
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.54 
SB_12022| Best HMM Match : 7tm_1 (HMM E-Value=0.059)                   33   0.71 
SB_14269| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3)                     30   5.0  
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)          30   5.0  
SB_44278| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_19665| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)
          Length = 479

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 20/206 (9%)

Query: 259 LKNRFLNHLSWLKLIANYKFGGETNFHSFVGIILTGWSRYSHFDPLCEXXXXXXXXXXXX 318
           +++R  N+L +L+L  +       N    +GI LTGWSRY +F  LCE            
Sbjct: 67  IRDRLDNNLKYLELATSLP-----NTTKVMGIALTGWSRYDYFGTLCELLPAGIPSLVIC 121

Query: 319 XXXXRKFNEGHLSYNNAIKEMDFRDFFNKYLQTDFSDSLHCVIHDIEKTNYSPCIFDGCE 378
                  N G +  +N ++++  R          F D +      I         F G E
Sbjct: 122 LTA---LNRGFMD-DNLLEDISSR--------LGFKDKIDIGAKAIYNDELCNANFPGHE 169

Query: 379 LYNYLSEFLKIHENVIYYFESEKHGLSSLQYYANQKNLINMNNAVMNMKLCNGTLHELFD 438
           +Y  + +  K    +    E+EK  +   Q  +   +   + +A      C   +  +  
Sbjct: 170 IYKIVCKLSKALHALDMTKETEKGWMLHRQLQSQALSYFRLESARKQSVSC---ISNMRS 226

Query: 439 VERKLLVVMSQYYGNDTIEEYINAKM 464
           V R+ +  + + Y N T++E+I  K+
Sbjct: 227 VRREAMAELPKIYFNSTVKEWIQDKV 252


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 25/122 (20%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 83   LLVEYEDMFPYEGRLVNLRAKNCYDKIELQRFLRGAIELGFEIIPLIQTFGHMEFVLKQ- 141
            LL   ED+F  +   ++L     + ++EL   +     +  E++ LI+   H++  L   
Sbjct: 1531 LLSLIEDLFHIQVEFLSLIEDLFHIQVELLSLIEDLFHIHVELLSLIEDLFHIQVELMSL 1590

Query: 142  -KEFYHLR-EDPTYPDSICPTKIESQMLIKEML---IQIKQIVEDINPETTVL--IWDDM 194
             ++ +H++ E  +  + + P ++E   LI+++    +++  ++ED+ P    L  + +D+
Sbjct: 1591 IEDLFHIQVELLSLIEDLFPIQVELMSLIEDLFHIQVELMSLIEDLFPIQVELLSLIEDL 1650

Query: 195  FR 196
            F+
Sbjct: 1651 FQ 1652



 Score = 31.5 bits (68), Expect = 1.6
 Identities = 27/135 (20%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 65   LNYLEDLLPVLKKHGANGLLVEYEDMFPYEGRLVNLRAKNCYDKIELQRFLRGAIELGFE 124
            ++ +EDL P+  +     LL   ED+F  + +L++L       ++EL   +     +  +
Sbjct: 1630 MSLIEDLFPIQVE-----LLSLIEDLFQIQVQLLSLIEDLFQIQVELLSVIEDLFHIQVQ 1684

Query: 125  IIPLIQTFGHMEFVLKQ--KEFYHLR-EDPTYPDSICPTKIESQMLIKEML---IQIKQI 178
            +  L++   H++F L    ++ +H++ E  +  + +    +E   LI+++    +++  +
Sbjct: 1685 LFSLVEYLFHIQFELLSLIEDLFHIQVELLSLIEDLFHIHVELLSLIEDLFHIQVELLSL 1744

Query: 179  VEDINPETTVLIWDD 193
            +ED+      L+ DD
Sbjct: 1745 IEDLFHIQVELLSDD 1759



 Score = 29.5 bits (63), Expect = 6.6
 Identities = 21/106 (19%), Positives = 55/106 (51%), Gaps = 6/106 (5%)

Query: 83   LLVEYEDMFPYEGRLVNLRAKNCYDKIELQRFLRGAIELGFEIIPLIQTFGHMEFVLKQ- 141
            LL   ED+F  + +L++L     + ++EL   +     +  E++ LI+   H++  L   
Sbjct: 1475 LLSLVEDLFHIQVQLLSLIEDLFHIQVELLSLIEDLFHIHVELLSLIEDLFHIQVELLSL 1534

Query: 142  -KEFYHLR-EDPTYPDSICPTKIESQMLIKEML---IQIKQIVEDI 182
             ++ +H++ E  +  + +   ++E   LI+++    +++  ++ED+
Sbjct: 1535 IEDLFHIQVEFLSLIEDLFHIQVELLSLIEDLFHIHVELLSLIEDL 1580


>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1450

 Score = 33.1 bits (72), Expect = 0.54
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 399 SEKHGLSSLQYYANQKNLINMNNAVMNMK--LCNGTLHELFDVERKLLVVMSQYYGNDTI 456
           S ++ +  L      K LI   N  ++ K  +C G    L D+ + LL   S++   +T 
Sbjct: 132 SGEYNVGELVVPTRYKKLILEKNGTISRKEFVCEGRKIPLDDIRKDLLEKHSRFIRQNTD 191

Query: 457 EEYINAKMLHLKRKLEGSMKIFKDLMGIRAFETSLKHLKWDSTVLESH 504
           E Y     L L ++L+  +  F +  G+      LK+++    ++  H
Sbjct: 192 EHYDEMPRLQLVQRLK-ELNEFDESEGLTVMRRKLKNIERQRNLMVWH 238


>SB_12022| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
          Length = 208

 Score = 32.7 bits (71), Expect = 0.71
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 159 PTKIESQMLIKEMLIQIKQIVEDINPET-TVLIWDDMFRSIKLKSWNEIGYF 209
           P K+ S  L+K++L+ +K+I E++ P + TV    D   ++ L     +GYF
Sbjct: 75  PMKLSSSSLVKKLLVGVKRIREELGPTSYTVTCQYDKDAAVVLFGIVTLGYF 126


>SB_14269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 11/16 (68%), Positives = 15/16 (93%)

Query: 53 VVHLDLKGSPPSLNYL 68
          +VHLDLKG+PP ++YL
Sbjct: 52 LVHLDLKGAPPKMSYL 67


>SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3)
          Length = 452

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 46  RPILRYVVVHLDLKGSPPSLNYL 68
           R  L + +VHLD  G+PP ++YL
Sbjct: 412 RGFLEHKLVHLDFNGAPPRMSYL 434


>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
          Length = 966

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 220 GANSSVSHVN--LLKYHRKFDNIWIATAFKGADGRLSTIPNLKNRFLNHLSWLKLIANYK 277
           GANS +++ +  +    +K   I I   ++G   +L         +  H+ WL  +  +K
Sbjct: 234 GANSFITNPDNVITDLKQKDARIIIVLTYEGKCRKLMCSAFRHGFYGKHIVWL--LRGWK 291

Query: 278 F-GGETNFHSFVGIILTGWS 296
           F GG  NF  F  +IL+ W+
Sbjct: 292 FQGGHCNFMRFEEVILSTWT 311


>SB_44278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 451 YGNDTIEEYINAKMLHLKRKLEGSMKIFKDLM-GIRAFETSLKHLKWDSTVLESH 504
           YG  T+   +   +  L++  E   K +++ +   R  E SL  L WD T  ES+
Sbjct: 36  YGTSTLTTQLEGDLQFLQKGKEAVRKQYQNALDATRQSEASLMELSWDLTGYESY 90


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 48  ILRYVVVHLDLKGSPPSLNYLEDLLPVLKKHGA--NGLLVEYEDMFPYEGRLVNLRAKNC 105
           ++ YV   L  +G+P SL   +    +L++     + +    ED+F  E +L +    NC
Sbjct: 60  VVSYVTDFLRNRGTPRSLGLTKTRGKILERFDKKLSTMGCTKEDLFEMEKKLESRTKANC 119

Query: 106 YDKIELQRFLRGAIELGFEII 126
            D+   +R   G ++   ++I
Sbjct: 120 TDRDRTERLSTGRLQTRLDMI 140


>SB_19665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 35  IRYTRENKNLTRPILRYVVVHLDLKGS-PPSLNYLEDLLPVLKKHGANGLLVEYEDMFPY 93
           + +T +NKNL  P+       + + G+  P+   L D   V  ++    ++ + +D  P 
Sbjct: 369 VYFTNDNKNL--PLTLATSYDIPINGTWYPAGQTLNDNRTVSTEYDFQMMICDKQDNHPI 426

Query: 94  EGRLVNLRAKNCY 106
           EG +V+    NCY
Sbjct: 427 EGVMVSGIVNNCY 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,403
Number of Sequences: 59808
Number of extensions: 685529
Number of successful extensions: 1440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1422
Number of HSP's gapped (non-prelim): 19
length of query: 504
length of database: 16,821,457
effective HSP length: 85
effective length of query: 419
effective length of database: 11,737,777
effective search space: 4918128563
effective search space used: 4918128563
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)