GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002293-TA|BGIBMGA002293-PA|undefined
         (504 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    30   0.039
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   3.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   3.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 30.3 bits (65), Expect = 0.039
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 46  RPILRYVVVHLDLKGSPPSLNYLEDLLPVLKKHGANGLLVEYEDMFPYEGRLVNLRAKNC 105
           +P++R   + +DL+G+P +  Y+E+ LP       NG+++  +     E +  N + K C
Sbjct: 395 KPLIRVENI-IDLEGAPQNFYYIEEYLP------GNGVIIPDDPPIGCECKTCNSKTKCC 447

Query: 106 Y 106
           +
Sbjct: 448 F 448


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 120 ELGFEIIPLIQTFGHMEFVLKQKEFYHLREDPTY-PDSI--CPTKIESQMLIKEMLIQIK 176
           E GF  +   + + H   +LK K +     DP   P S       +  Q+L K M     
Sbjct: 26  EFGFSYLLNCKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDW 85

Query: 177 QIVEDINPETTVLIWDDMFRSIKLKSWNEIGY 208
             V +++   T L+W D   S K   ++ I Y
Sbjct: 86  TSVMELHSWMT-LMWTDSHLSWKPSDFDGINY 116


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 13/56 (23%)

Query: 352 DFSDSLHCVIHDIEKTNYSPCIF-------------DGCELYNYLSEFLKIHENVI 394
           ++S S+   +H+IE T+Y   ++              GCE+   L ++L++ ENVI
Sbjct: 277 EYSSSIIMELHNIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIENVI 332


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 13/56 (23%)

Query: 352 DFSDSLHCVIHDIEKTNYSPCIF-------------DGCELYNYLSEFLKIHENVI 394
           ++S S+   +H+IE T+Y   ++              GCE+   L ++L++ ENVI
Sbjct: 292 EYSSSIIMELHNIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIENVI 347


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 147 LREDPTYPDSICPTKIESQMLIKEMLIQIKQIVED 181
           LR  P +  S CP +I    +    + +  +++ED
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTKMLED 503


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 147 LREDPTYPDSICPTKIESQMLIKEMLIQIKQIVED 181
           LR  P +  S CP +I    +    + +  +++ED
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTKMLED 503


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 96   RLVNLRAKNCYDKIELQRFLR 116
            +L+ ++A+N Y ++EL R LR
Sbjct: 1159 QLIIVQAENAYPEVELDRELR 1179


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,544
Number of Sequences: 429
Number of extensions: 6676
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 504
length of database: 140,377
effective HSP length: 61
effective length of query: 443
effective length of database: 114,208
effective search space: 50594144
effective search space used: 50594144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)