GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002292-TA|BGIBMGA002292-PA|IPR006578|MADF
         (230 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.6  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.6  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.6  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    21   8.0  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   8.0  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   8.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 101 QNNQKALTQLQTED-SPGEAAWHSPKPEAHTSQESQSPSDMNYQNESR 147
           +++  A++Q+      PG  +  SP+  + +S +S SP  + Y    R
Sbjct: 46  ESHLNAISQITNSTLDPGRKSPSSPRISSPSSTKSGSPGFLTYTKADR 93


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 36  AIAKELHQTCDTVKLKWKTIRDGYIKYKKQVKDSAFNGKKINDYIWRSQLVFLDSHNVTR 95
           A A +L++T   VK+ ++  R   +K KK++K+     + I+  +  S      S N+ +
Sbjct: 287 ASALQLNET--QVKIWFQNRR---MKQKKRMKEGLIPPEPISASLSTSNSNSPSSTNLIQ 341

Query: 96  NSKANQNNQKA 106
           N  +N+N++++
Sbjct: 342 NEASNENSRES 352


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 36  AIAKELHQTCDTVKLKWKTIRDGYIKYKKQVKDSAFNGKKINDYIWRSQLVFLDSHNVTR 95
           A A +L++T   VK+ ++  R   +K KK++K+     + I+  +  S      S N+ +
Sbjct: 76  ASALQLNET--QVKIWFQNRR---MKQKKRMKEGLIPPEPISASLSTSNSNSPSSTNLIQ 130

Query: 96  NSKANQNNQKA 106
           N  +N+N++++
Sbjct: 131 NEASNENSRES 141


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 36  AIAKELHQTCDTVKLKWKTIRDGYIKYKKQVKDSAFNGKKINDYIWRSQLVFLDSHNVTR 95
           A A +L++T   VK+ ++  R   +K KK++K+     + I+  +  S      S N+ +
Sbjct: 76  ASALQLNET--QVKIWFQNRR---MKQKKRMKEGLIPPEPISASLSTSNSNSPSSTNLIQ 130

Query: 96  NSKANQNNQKA 106
           N  +N+N++++
Sbjct: 131 NEASNENSRES 141


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 94  TRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNE 145
           T  S    N +K   Q+Q+    G    H     +  +  S S S + YQ+E
Sbjct: 229 TSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHE 280


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 62  YKKQVKDSAFNGKKINDYIWRSQLV 86
           YK+ V++  +  K I  ++W   LV
Sbjct: 174 YKQCVENRKWQNKVIQKFLWTGGLV 198


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 62  YKKQVKDSAFNGKKINDYIWRSQLV 86
           YK+ V++  +  K I  ++W   LV
Sbjct: 407 YKQCVENRKWQNKVIQKFLWTGGLV 431


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 62  YKKQVKDSAFNGKKINDYIWRSQLV 86
           YK+ V++  +  K I  ++W   LV
Sbjct: 407 YKQCVENRKWQNKVIQKFLWTGGLV 431


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.124    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,543
Number of Sequences: 317
Number of extensions: 1706
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 230
length of database: 114,650
effective HSP length: 55
effective length of query: 175
effective length of database: 97,215
effective search space: 17012625
effective search space used: 17012625
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)