GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002292-TA|BGIBMGA002292-PA|IPR006578|MADF
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    29   0.57 
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    28   1.0  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   2.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.3  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   3.1  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    26   4.0  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   4.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.0  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   5.3  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   5.3  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    25   7.1  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   7.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.1  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   7.1  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   9.3  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.3  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 88  LDSHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSD 139
           LDS N + N KA+  N++  ++      P  +  + P PE+ ++ +S S  D
Sbjct: 44  LDSSNPSSNEKASHTNEEYRSKGNQSYVPSSS--NEPSPESSSNSDSSSSDD 93


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 111 QTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNES 146
           +T  S  E A   PKP A TS  S SP+ +  + ES
Sbjct: 278 ETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEES 313


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 57  DGYIKYKKQVK-DSAFNGKKINDYIWRSQLVFLDSHNVTRNSKANQNNQKALTQLQTEDS 115
           D + K+ KQ + +S+   K +N   + ++   L +HN +  SK+++N    +  +Q+  S
Sbjct: 167 DLFPKFSKQQQIESSSISKNLNTSSFNTRSP-LRNHNFSNPSKSSKNGVHTINNMQSSPS 225

Query: 116 PGEA 119
           P  +
Sbjct: 226 PSSS 229


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 93   VTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKRK 152
            ++R  ++N +N+       + D+ G  + H    +   S +SQSPS++  ++E   ++R+
Sbjct: 1538 ISRAGRSNGSNRGN----DSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRR 1593


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 85  LVFLDSHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQN 144
           L +L + +V ++ K  ++ +K+      +DS   +   +P  +AH+S E+      +  +
Sbjct: 58  LPYLTTEDVGKHKKTKESLEKS-----NDDSQKISKKGAPPEKAHSSSEASGSGSSS--D 110

Query: 145 ESRLTKRKTFSSRTQTDMXXXXXXXXXXXXXXEFANAESAQRLTAEAQXXXXXXXXXXXX 204
           ES  +  ++ SS    D               +  ++ S+    +E+             
Sbjct: 111 ESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 170

Query: 205 XNCENSQTD 213
              E+S  D
Sbjct: 171 SESESSSED 179


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 118 EAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKRKT 153
           + +  + + E   S ES+S  D +  N+ ++ KRKT
Sbjct: 233 DQSMETSESEEEESSESESDEDEDEDNKGKIRKRKT 268


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 5   RLIECVKDHVYLYDIKHKDYKNIALKTAVWEAIAKELHQ 43
           RL+  +K  +Y+Y++K+ +  N  L T+    IA  +H+
Sbjct: 98  RLVVLIKGSIYVYNLKNMELIN-TLNTSKGNVIAFAVHE 135


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 90  SHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRL 148
           S   T NS+A +NN          +S   +   S K  A  S ++   S+ N  N++ L
Sbjct: 453 SSKKTANSQATENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASL 511


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 101 QNNQKALTQLQTEDSPGEAAWHS---PKPEAHTSQESQSPSDMNYQNESRLT 149
           +N QKA +             H    P P       S  P   NY++E RLT
Sbjct: 23  ENQQKASSSFHESSLTSSTHSHPSNPPPPPTRLHDRSFKPVSKNYESEGRLT 74


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/50 (30%), Positives = 20/50 (40%)

Query: 61  KYKKQVKDSAFNGKKINDYIWRSQLVFLDSHNVTRNSKANQNNQKALTQL 110
           K++  + D A N K      W+S L F   H +       QNN   L  L
Sbjct: 568 KWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSL 617


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 105 KALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPS--DMNYQNESRLTKRKT 153
           K L Q+ +   P ++AW+S  P        Q+P    +  Q+E +L +  T
Sbjct: 81  KGLCQICSNSHPDDSAWNSNDPYYDPKSTPQNPRWYSVGVQSEYKLDRPVT 131


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 110 LQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKRK 152
           L  + S G +  +   PE + +Q     +D+ + +ES+LT+RK
Sbjct: 7   LNLDTSNGFSEEYISHPERNDNQGIVEITDLVFSSESKLTQRK 49


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 100 NQNNQKALTQLQTEDSPGEAAWHSPKP 126
           +++ Q ++ + +T+DS  E+AW  P P
Sbjct: 836 SRDEQYSMERKKTDDSLAESAWSIPHP 862


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 102 NNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDM 140
           ++ + LT  + ED   EA   SP+PE  TS+E +   ++
Sbjct: 341 DDMEELTDEEEEDEEEEAESQSPEPE--TSEEEKEDKEL 377


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 93  VTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKRK 152
           V   SK+    +K L ++   D P EAA      +    Q+S+ P   N  ++S+L  RK
Sbjct: 620 VKNYSKSTDLLKKTL-RIPRNDEPLEAANQFDLLKVSPQQKSEVPPKRNELSQSKLKNRK 678


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 45  CDTVKLKWKTIRDGYIKYKKQVKDSAFNGKKINDYIWRSQLVFLDSHNVTRNSKANQNN 103
           CD     W+   D Y ++K++  D  F   K  + +  ++L FL + N+        N+
Sbjct: 166 CDINLHDWEPDDDPYTEHKRRRADCVFFTWKDPNSLSPTKLSFLSTSNIDPEDLTEDNS 224


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.124    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 923,968
Number of Sequences: 5004
Number of extensions: 33887
Number of successful extensions: 94
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 17
length of query: 230
length of database: 2,362,478
effective HSP length: 70
effective length of query: 160
effective length of database: 2,012,198
effective search space: 321951680
effective search space used: 321951680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)