Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002292-TA|BGIBMGA002292-PA|IPR006578|MADF
(230 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 30 1.4
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 29 2.4
03_05_0341 + 23300588-23300710,23300958-23301363,23301463-233016... 29 3.2
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 5.5
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 28 5.5
05_03_0038 + 7612866-7613132,7615691-7616608 28 5.5
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 28 5.5
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 28 5.5
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 7.3
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 27 9.6
>03_02_0985 -
12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 69 SAFNGKKINDYIWRSQLVFLDSHNVTRNSKANQNNQKALTQLQTEDSPGEA 119
SA GK+ N I S+++ D+H++T +S A K ++Q TE+S +A
Sbjct: 340 SAILGKEANVEIPGSRVILSDTHDITCSSGAPTTELKGVSQF-TEESTKDA 389
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 95 RNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQ 143
+ SK+NQ +L Q++ ++ E AW+ K A+ + NY+
Sbjct: 22 KRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKSGGTNYR 70
>03_05_0341 +
23300588-23300710,23300958-23301363,23301463-23301671,
23301944-23302298,23302392-23302630,23303777-23304055
Length = 536
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 89 DSHNVTRNSKANQNNQKALTQLQTEDSPG-----EAAWHSPKPEAHTSQESQSPSDMNYQ 143
D H + S N+ N K +Q+ +++PG E+ H E+ S++S PS+ Y
Sbjct: 339 DVHKI--GSSQNKRNSKMASQVHIKEAPGGDVSSESNKHGVSHESLESEDSDGPSEPPYI 396
Query: 144 NESR 147
+ R
Sbjct: 397 SSMR 400
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 89 DSHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQS 136
+SH + +K + NQ+++ ++ A W KP H+ Q ++
Sbjct: 979 NSHPKRQQAKRSGKNQQSIQPIERPHGNEGAVWAPVKPSGHSEQSGEA 1026
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 110 LQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKR 151
LQT DSP ++++ S P+ TS+ SP D + S L+ R
Sbjct: 291 LQTHDSPSDSSYQSLSPDC-TSR--LSPKDQTFTASSHLSLR 329
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 28.3 bits (60), Expect = 5.5
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 52 WKTIRDGYIKYKKQVKDSAFNGKKINDYIWRSQLVFLDSHNVTRNSKANQNNQKALTQLQ 111
W+ IR I+YKK + + + I +QL F H+VT +S+ + KA
Sbjct: 225 WEEIRMASIQYKKGLVYAPHIMRMIETV---TQLQF--RHDVT-HSQLHLRLLKAPRSSA 278
Query: 112 TEDSPGEAAWHSPKPEAHTSQESQSPSDM 140
T D P + P PE S + PS +
Sbjct: 279 TRDVPSSSTQPPPAPERPASVARREPSPL 307
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 81 WRSQLVFLDSHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDM 140
WRS S+N + K + + +A + P A H + + + S+ +++ D
Sbjct: 629 WRSATGVQKSYNKSEAEKEKRRSYEAKRRKLKASMPNSQAVHGQEADNNGSEGAENDDDD 688
Query: 141 NYQNESRLTKRKTFSSRTQ 159
Y NE+ L + S Q
Sbjct: 689 LYVNEAFLADTENRSINYQ 707
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 20 KHKDYKNIALKTAVWEAIAKELHQTCDTVK 49
KHKD K +T++ + + K+ QT +T+K
Sbjct: 598 KHKDVKTTNEETSILDGVTKDKRQTHETLK 627
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 101 QNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMN 141
+N Q+ + Q D PG +A S + +H Q+ QSP+ ++
Sbjct: 1505 RNIQQRMVPQQQNDLPGASAVPSVQNGSHGQQQKQSPAALS 1545
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 115 SPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKRKTFSSRTQT 160
SP + + P ++ SP D+NY + S + R++ SSR+ T
Sbjct: 639 SPPQVQAITAAPNVTCQRKLSSPGDLNYPSFSVVFGRRSSSSRSTT 684
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.124 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,361,988
Number of Sequences: 37544
Number of extensions: 179969
Number of successful extensions: 409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 11
length of query: 230
length of database: 14,793,348
effective HSP length: 80
effective length of query: 150
effective length of database: 11,789,828
effective search space: 1768474200
effective search space used: 1768474200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)
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