GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002292-TA|BGIBMGA002292-PA|IPR006578|MADF
         (230 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.34 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 115 SPGEAAWHSPKPEAHTSQESQ 135
           +P EA+WHSP+     +Q+ Q
Sbjct: 150 TPTEASWHSPEAHISVAQKLQ 170


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 83  SQLVFLDSHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEA--HTSQESQSPSDM 140
           S L  L +H    + + ++N Q+     Q  +   E   HS +  +     Q+ Q   D 
Sbjct: 43  SSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQ 102

Query: 141 NYQNESRL 148
             Q +SR+
Sbjct: 103 QQQQQSRM 110


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/13 (53%), Positives = 12/13 (92%)

Query: 43  QTCDTVKLKWKTI 55
           Q CD+VK+K++T+
Sbjct: 324 QNCDSVKIKFETL 336


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 147 RLTKRKTFSSRTQTD 161
           RLT RK F SRT  D
Sbjct: 372 RLTCRKCFKSRTNLD 386


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 92  NVTRNSKANQNNQK 105
           N  +N+K N NNQK
Sbjct: 432 NNQKNNKKNANNQK 445


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.124    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,944
Number of Sequences: 429
Number of extensions: 2251
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 230
length of database: 140,377
effective HSP length: 56
effective length of query: 174
effective length of database: 116,353
effective search space: 20245422
effective search space used: 20245422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)