GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002291-TA|BGIBMGA002291-PA|undefined
         (68 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   0.53 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   0.70 
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    24   2.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    24   2.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    23   3.8  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    23   3.8  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    22   8.7  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    22   8.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    22   8.7  

>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 19 TIYNWPPQLDRSQHTYDPSSMTSLIVSARSF 49
          T  N   QL++  +TY PS +TS  +  +S+
Sbjct: 34 TFPNQENQLEKRDYTYSPSGITSFPLDLQSY 64


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 20  IYNWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDR 59
           ++   P+    Q+ ++P+ + S+I+SAR F +  +   D+
Sbjct: 82  VFGPDPESVPCQYYFNPAGLYSIIISAREFASGNLLSLDQ 121


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 8   SKLPPVLSPTLTIYNWPPQL 27
           S LPP  S  +T+  W PQL
Sbjct: 411 SALPPHESQKVTVVRWNPQL 430


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 25  PQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGP 57
           P    SQH +  SS +S  VS  S  + T  GP
Sbjct: 113 PSTAASQHHHHHSSSSSYAVSPTSPTSPTSSGP 145


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 20   IYNWPPQLDRSQHTYDPSSMTSLIVSARS 48
            IY+ PP LDR  H+         +V  RS
Sbjct: 1378 IYSVPPNLDRESHSRPFGKKYDTVVFNRS 1406


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 12/37 (32%), Positives = 14/37 (37%)

Query: 21  YNWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGP 57
           Y   P    S   Y P  +   + S RS   D V GP
Sbjct: 612 YKVRPSFISSVIKYTPQQLDKALHSNRSIAKDIVSGP 648


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 25  PQLDRSQHTYDPSSMTS 41
           PQL+   H+Y+P++  S
Sbjct: 123 PQLNSPSHSYEPTTFPS 139


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 2   SPKIHGSKLPPVLSPTLTIYNWP 24
           +P++ GS+ PP       IYN P
Sbjct: 348 TPQVQGSRPPPPPPMPAPIYNVP 370


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 39  MTSLIVSARSFVNDTVQGPDRPTDMRG 65
           ++S I+SA   +  +V+G D P D+RG
Sbjct: 662 VSSAIISALGELA-SVEGEDMPVDVRG 687


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,751
Number of Sequences: 5004
Number of extensions: 10478
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 2,362,478
effective HSP length: 48
effective length of query: 20
effective length of database: 2,122,286
effective search space: 42445720
effective search space used: 42445720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)