Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002291-TA|BGIBMGA002291-PA|undefined
(68 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 31 0.11
03_05_0495 - 24907659-24908747 29 0.61
12_02_1138 - 26397585-26398682 27 1.9
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 27 1.9
05_03_0314 + 12203589-12204675,12207915-12208861 26 4.3
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 25 5.7
10_02_0009 + 4128909-4130123 25 7.5
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 25 7.5
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 25 7.5
10_08_0643 + 19541991-19542188,19543261-19543515,19543598-195437... 25 10.0
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 25 10.0
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 31.1 bits (67), Expect = 0.11
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 14 LSPTLTIYNWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRPTDM 63
LS LT+Y P + S Y SS S F +DTVQG R D+
Sbjct: 187 LSQALTLYKQPQNVSSSSTRYASSSRKKHKAS-NDFEDDTVQGSQRMRDL 235
>03_05_0495 - 24907659-24908747
Length = 362
Score = 28.7 bits (61), Expect = 0.61
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 17 TLTIYNWPPQLDRSQHTYDPSSMTSLIVSARSFVNDT 53
TLT NW Q++ HTY P +++ ++ N T
Sbjct: 298 TLTRVNWTDQVEGHPHTYRPGEVSASLIKELRKSNGT 334
>12_02_1138 - 26397585-26398682
Length = 365
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 17 TLTIYNWPPQLDRSQHTYDPSSMTSLIV 44
TLT NW +D HTY P ++ ++
Sbjct: 301 TLTRVNWTDSVDGHPHTYRPDEVSGELI 328
>02_01_0699 -
5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 27.1 bits (57), Expect = 1.9
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 40 TSLIVSARSFVNDTVQGPDRP 60
+S++ +A+SF+N+T++G D P
Sbjct: 231 SSIVHAAQSFINETMEGSDVP 251
>05_03_0314 + 12203589-12204675,12207915-12208861
Length = 677
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 6 HGSKLPPVLSPTLTIYNWPPQLDRSQHTYDPSSMTSLIVSARSFVN---DTVQGPDR 59
HG +PP + I PPQ+ QH Y P+ + I++A + N D V P R
Sbjct: 468 HG--MPP--NQNYMIQPCPPQIGTLQHAYSPNPRSGSILAADTNPNSICDVVAYPAR 520
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 3 PKIHGSKLPPVLSPT---LTIYNWPPQLDRSQHTYDPS 37
PKI PP ++P+ +T Y PP + S +Y+PS
Sbjct: 616 PKITPYPSPPEVTPSPPEITPYPSPPDIVPSPPSYEPS 653
>10_02_0009 + 4128909-4130123
Length = 404
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 17 TLTIYNWPPQLDRSQHTYDPSSMTSLIV 44
TLT +W ++R HTY +T ++
Sbjct: 331 TLTYADWSRPVNRHPHTYTAEEVTEKVI 358
>08_02_1340 - 26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 8 SKLPPVLSPTLTIYNWPPQLDRSQH 32
SKLPPVL+ L WP +L S H
Sbjct: 977 SKLPPVLALHLKRNLWPLKLKVSGH 1001
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 29 RSQHTYDPSSMTSLIVSARSFVNDTVQGPDRPT 61
R +H YD +S+ S+I A S V +T DRP+
Sbjct: 670 RLRHQYDATSIQSVIDLAMSCVENT--STDRPS 700
>10_08_0643 +
19541991-19542188,19543261-19543515,19543598-19543722,
19543815-19543859,19544618-19544699,19545099-19545167,
19545276-19545446,19545530-19545595,19546236-19546273,
19547478-19547759,19548286-19548419,19548887-19548981,
19549083-19549127,19549250-19549309,19549483-19549584,
19549852-19549903,19549982-19550034,19550138-19550202,
19550579-19550630,19550780-19550857
Length = 688
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 8 SKLPPVLSPTLTIYNWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGP 57
SK PP+ +T+ N PP LD + S ++ A V D + P
Sbjct: 229 SKYPPMKVLLMTLQNAPPGLDYDRDRRFSKSFKEMV--AMCLVKDQTKRP 276
>06_03_0793 +
24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 24.6 bits (51), Expect = 10.0
Identities = 7/24 (29%), Positives = 19/24 (79%)
Query: 40 TSLIVSARSFVNDTVQGPDRPTDM 63
+S++ +A++F+N+ ++G D P ++
Sbjct: 236 SSVVQAAQAFINEAMEGSDVPEEV 259
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,333
Number of Sequences: 37544
Number of extensions: 69236
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 11
length of query: 68
length of database: 14,793,348
effective HSP length: 48
effective length of query: 20
effective length of database: 12,991,236
effective search space: 259824720
effective search space used: 259824720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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