Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002291-TA|BGIBMGA002291-PA|undefined
(68 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81491-12|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 28 0.70
U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical pr... 27 1.2
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 1.2
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 1.2
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 27 2.1
L08403-7|AAA28019.2| 309|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical pr... 26 2.8
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z72518-2|CAA96700.1| 613|Caenorhabditis elegans Hypothetical pr... 25 6.5
Z70034-11|CAI79119.1| 558|Caenorhabditis elegans Hypothetical p... 25 6.5
Z70034-4|CAA93860.1| 618|Caenorhabditis elegans Hypothetical pr... 25 6.5
Z70034-3|CAA93854.2| 621|Caenorhabditis elegans Hypothetical pr... 25 6.5
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 25 8.6
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 25 8.6
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 25 8.6
>Z81491-12|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 28.3 bits (60), Expect = 0.70
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 8 SKLPPVLSPTLTIYNWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQ-GPDRPT 61
SK P + T T + SQ T PS+ T++IVS+ + N T P PT
Sbjct: 125 SKYTPAPTVTSTTVVDTSESSTSQSTTTPSTTTTIIVSSTTTTNPTTSTTPTTPT 179
>U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical
protein T07H6.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 12 PVLSPTLTIYNWPPQLDRSQHTYDPSSMTSL 42
PV SP L+ +NWPP++ ++ + SS S+
Sbjct: 371 PVCSP-LSCHNWPPRVPHARILFSKSSHGSI 400
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 8 SKLPPVLSPTLTIYN-WPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRPT 61
S P SPT Y+ PQ S TY PSS T S R F + P PT
Sbjct: 1731 SPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGF-SSPQYSPTSPT 1784
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 8 SKLPPVLSPTLTIYN-WPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRPT 61
S P SPT Y+ PQ S TY PSS T S R F + P PT
Sbjct: 1738 SPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGF-SSPQYSPTSPT 1791
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 2 SPKIHGSKLPPVLSPTLTIYNWP 24
S +H + P +P T YNWP
Sbjct: 573 STSVHSTTATPSTTPGTTTYNWP 595
>L08403-7|AAA28019.2| 309|Caenorhabditis elegans Hypothetical
protein F42H10.9 protein.
Length = 309
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 23 WPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRPTDMRG 65
+ PQL R +T + ++S + SAR+ + + Q RPT + G
Sbjct: 192 YQPQLRRKANTTNIVDVSSQVPSARNAIYGSWQDRHRPTRLYG 234
>Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical
protein F44E5.2 protein.
Length = 820
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 21 YNWPPQLDRSQHTYDPSSMTSLIVSARSFVND 52
YNWP L S+ +LIV RSF+ND
Sbjct: 136 YNWPKALGHML-----PSLQTLIVCQRSFIND 162
>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical
protein T01C4.1 protein.
Length = 1484
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 16 PTLTIYNWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRPTDMRG 65
P +T W D S Y + S+ + F+N V +R +RG
Sbjct: 287 PNMTCTEWKTITDDSSDCYSEAKKLSITIDLFKFLNPRVNCVNRQKILRG 336
>Z72518-2|CAA96700.1| 613|Caenorhabditis elegans Hypothetical
protein ZC374.2 protein.
Length = 613
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 7 GSKLPP------VLSPTLTIYNWPPQLDRSQHTYDPSSMTSLIVSARS 48
GS +PP +++PT W P + QH Y ++ L S+ S
Sbjct: 188 GSLVPPLHFTANIMNPTTVQLKWQPAMPGKQHIYYLVNVKQLTTSSGS 235
>Z70034-11|CAI79119.1| 558|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 558
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 11 PPVLSPTLTIYNWPPQLDRSQHTYDPS 37
PP +S + +YN PP + Q + P+
Sbjct: 209 PPSVSESGGVYNGPPGFQQKQPNFQPT 235
>Z70034-4|CAA93860.1| 618|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 618
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 11 PPVLSPTLTIYNWPPQLDRSQHTYDPS 37
PP +S + +YN PP + Q + P+
Sbjct: 269 PPSVSESGGVYNGPPGFQQKQPNFQPT 295
>Z70034-3|CAA93854.2| 621|Caenorhabditis elegans Hypothetical
protein C18E9.3a protein.
Length = 621
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 11 PPVLSPTLTIYNWPPQLDRSQHTYDPS 37
PP +S + +YN PP + Q + P+
Sbjct: 272 PPSVSESGGVYNGPPGFQQKQPNFQPT 298
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 22 NWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRP 60
N PPQ DRS H SS++S SAR + ++ P +P
Sbjct: 376 NAPPQSDRSAHNL--SSLSSGNQSARG-RSSSISSPCKP 411
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 22 NWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRP 60
N PPQ DRS H SS++S SAR + ++ P +P
Sbjct: 376 NAPPQSDRSAHNL--SSLSSGNQSARG-RSSSISSPCKP 411
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 22 NWPPQLDRSQHTYDPSSMTSLIVSARSFVNDTVQGPDRP 60
N PPQ DRS H SS++S SAR + ++ P +P
Sbjct: 376 NAPPQSDRSAHNL--SSLSSGNQSARG-RSSSISSPCKP 411
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.131 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,643
Number of Sequences: 27539
Number of extensions: 56515
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 19
length of query: 68
length of database: 12,573,161
effective HSP length: 48
effective length of query: 20
effective length of database: 11,251,289
effective search space: 225025780
effective search space used: 225025780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -