GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002291-TA|BGIBMGA002291-PA|undefined
         (68 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    19   7.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   7.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    18   9.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.3  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 36

 Score = 18.6 bits (36), Expect = 7.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 1  MSPKIHGSKLPPVLSPTL 18
          MS   H ++LP  LSP +
Sbjct: 1  MSSPYHVAQLPHHLSPNM 18


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.6 bits (36), Expect = 7.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 1   MSPKIHGSKLPP 12
           +S  +HG+ LPP
Sbjct: 357 LSHPLHGNLLPP 368


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 52  DTVQGPDRPTD 62
           D +  P RPTD
Sbjct: 233 DAILPPSRPTD 243


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 5   IHGSKLPPV 13
           IHG  LPP+
Sbjct: 436 IHGPPLPPL 444


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 5   IHGSKLPPV 13
           IHG  LPP+
Sbjct: 436 IHGPPLPPL 444


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,752
Number of Sequences: 429
Number of extensions: 670
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 68
length of database: 140,377
effective HSP length: 45
effective length of query: 23
effective length of database: 121,072
effective search space:  2784656
effective search space used:  2784656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)