GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002290-TA|BGIBMGA002290-PA|undefined
         (154 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    24   0.51 
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    24   0.51 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   4.7  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
          protein 20 protein.
          Length = 124

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 34 DQYMKFDDPFNEKWNAQPNRCFDDYTKCLVSQDNPTP 70
          DQY    D  N K   Q +R  ++Y  CL+ +   TP
Sbjct: 21 DQYTIKYDNVNLKEILQSDRLTENYVNCLLEKKPCTP 57


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 109 ILDTGRCDFKYRDHRDGITETLR 131
           +LD G+C  +    + GITET++
Sbjct: 45  VLDKGKCTKEAEKLKKGITETMK 67


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
          castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 37 MKFDDPFN-EKWNAQPNRCFDDYTKCLVSQDNPTP 70
          M   D F+ E  N   N C  D T   V  +NP P
Sbjct: 1  MDSSDHFDRESPNIDHNSCSSDDTVLSVGNENPPP 35


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 9   PQSDIDDAMVIDVGKYTTVRLD 30
           P + + D+ V+D  K TTV +D
Sbjct: 158 PITRVIDSKVVDSRKNTTVSID 179


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.140    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,815
Number of Sequences: 317
Number of extensions: 1901
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 114,650
effective HSP length: 52
effective length of query: 102
effective length of database: 98,166
effective search space: 10012932
effective search space used: 10012932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)