GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002290-TA|BGIBMGA002290-PA|undefined
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    32   0.034
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   3.9  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   5.1  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    24   8.9  

>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 32.3 bits (70), Expect = 0.034
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 13  IDDAMVIDVGKYTTVRLDFINDQYMKFDDPFNEKWNAQPNRCFDDYTKCLVSQDNP 68
           I D+ +      TTVRL  +++  +  D+P  E  N+ P++  D+ T  L S   P
Sbjct: 382 IQDSFIATGSMDTTVRLWNLDNDVLHKDNPVEESLNSPPDQPVDNATNVLTSHTAP 437


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 51  PNRCFDDYTKCLVSQDNPTPVCGF 74
           P    DDY   LVS D+  P  GF
Sbjct: 566 PKEKMDDYHFILVSDDSKAPASGF 589


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 35  QYMKFDDPFNEKWNAQPNRCFDDYTK 60
           +Y+ F+D        QP  CF D+ K
Sbjct: 143 EYVSFNDELKSLETGQPLYCFQDFQK 168


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 44  NEKWNAQPNRCFDDYTKCLVSQDNPTPVCGFNRPTDVEEYEGYRTFNSYCDAYFDNCRKG 103
           +E    QP    +D  K  + +D+ T     N P ++EE    +  NS+CD + D+ R G
Sbjct: 324 DEYLQIQPLPTDEDIKKIPLIEDD-TSFMNVN-PDELEELLE-KKLNSFCDDFGDDERSG 380

Query: 104 Y 104
           +
Sbjct: 381 F 381


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 890,126
Number of Sequences: 5004
Number of extensions: 41566
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 2,362,478
effective HSP length: 67
effective length of query: 87
effective length of database: 2,027,210
effective search space: 176367270
effective search space used: 176367270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)