GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002290-TA|BGIBMGA002290-PA|undefined
         (154 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    29   1.7  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    29   1.7  
10_08_0439 - 17926021-17927133                                         29   1.7  
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199...    28   3.8  
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204...    28   3.8  
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008...    28   3.8  
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    27   5.1  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   6.7  
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203...    27   8.9  
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012...    27   8.9  

>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 41  DPFNEKWNAQPNRCFDDY-TKCLV---SQDNPTPVCGFNRPTDVEEYE 84
           DP   +  A+   C   Y + C++   S  N  PVC +  PTD  EYE
Sbjct: 339 DPIPTRARAKQLPCMHLYHSSCILPWLSSRNTCPVCRYELPTDDAEYE 386


>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 41  DPFNEKWNAQPNRCFDDY-TKCLV---SQDNPTPVCGFNRPTDVEEYE 84
           DP   +  A+   C   Y + C++   S  N  PVC +  PTD  EYE
Sbjct: 881 DPIPTRARAKQLPCMHLYHSSCILPWFSSRNTCPVCRYELPTDDAEYE 928


>10_08_0439 - 17926021-17927133
          Length = 370

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 67  NPTPVCGFNRPTDVEEYEGYRTFN 90
           N  P+C F  PTD  +YEG +  N
Sbjct: 271 NSCPICRFELPTDDPDYEGRKKSN 294


>12_01_0273 -
           1989058-1989349,1989730-1989837,1990315-1990508,
           1990601-1990717,1990801-1990966,1991323-1991490,
           1991734-1993052
          Length = 787

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 115 CDFKYRDHRDGITETLRRLWDV 136
           CDF+++D+   +  TLR+L+DV
Sbjct: 483 CDFRWKDYCPLVFRTLRKLFDV 504


>11_01_0272 -
           2042490-2042781,2043146-2043203,2043385-2043401,
           2043572-2043765,2043858-2043974,2044059-2044224,
           2044430-2044597,2044741-2046047
          Length = 772

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 115 CDFKYRDHRDGITETLRRLWDV 136
           CDF+++D+   +  TLR+L+DV
Sbjct: 479 CDFRWKDYCPLVFRTLRKLFDV 500


>07_03_1557 -
           27699675-27699972,27700546-27700630,27700741-27700847,
           27700942-27701135,27701252-27701368,27701466-27701631,
           27701723-27701887,27702185-27703428
          Length = 791

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 115 CDFKYRDHRDGITETLRRLWDVALED 140
           CDFK++D+   +  TLR+L+ V   D
Sbjct: 457 CDFKWKDYCPQVFRTLRKLFKVDAAD 482


>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 97  FDNCRKGYRYWRI--LDTGRCDFKYRDHRDGITETLRRLWDVALEDKNNNFETENFDQKV 154
           ++ CR   R + +   D        R H D      ++ WD+   DK  NF+ E   QK+
Sbjct: 153 YEECRDPPRLYLLDKFDNAGAGACSRRHSD--PSYFKKAWDMMRADKTGNFQREKKSQKI 210


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 62  LVSQDNPTPVCGFN--RPTDVEEYEGYRTFNSYCDAYFDNCRKG 103
           +V  +N T V G N  R   V +Y GY +  S+ D Y    RKG
Sbjct: 172 VVGPENKTVVSGDNFLRVKVVGDYTGYTSIPSFEDNYLVTPRKG 215


>10_07_0044 +
           12319382-12319532,12319978-12320163,12320247-12320396,
           12320495-12320644,12320728-12321417,12321641-12322033,
           12322073-12322546,12322634-12323974,12324042-12324388
          Length = 1293

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 12  DIDDAMVIDVGKYTT-VRLDFINDQYMKFDDPFNEKWNAQPNRCFDDYTKCLVSQ 65
           D++DA   +VG   T VRL F N   M +  P       Q      D T    S+
Sbjct: 71  DVNDAGTENVGSIVTPVRLPFTNSSDMSYSTPSEYTMPLQAEDAHGDVTNLSASE 125


>07_03_0517 +
           19000050-19000427,19000539-19000766,19001142-19001221,
           19001222-19001441,19001571-19001713,19002023-19002160,
           19002295-19002376
          Length = 422

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 77  PTDVEEYEGYRTFNSYCDAYFDNCRKGYRYWRILDTGRCDFKYRDHRDGITETLRRLWDV 136
           P  +E    Y  F   C  Y D     +RY  +  +       +  +    E L   WDV
Sbjct: 129 PDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERSLSAQWGKLS-AEILNNNWDV 187

Query: 137 ALEDKN 142
           ALE+ N
Sbjct: 188 ALEELN 193


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.140    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,193,001
Number of Sequences: 37544
Number of extensions: 232064
Number of successful extensions: 354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 12
length of query: 154
length of database: 14,793,348
effective HSP length: 76
effective length of query: 78
effective length of database: 11,940,004
effective search space: 931320312
effective search space used: 931320312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)