GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002290-TA|BGIBMGA002290-PA|undefined
         (154 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    30   0.63 
U80029-5|AAB37585.2|  199|Caenorhabditis elegans Hypothetical pr...    30   0.83 
AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical ...    27   4.4  
U80027-13|AAC48130.2|  200|Caenorhabditis elegans Hypothetical p...    27   5.9  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 41  DPFNEKWNAQPNRCFDDYTKCLVSQD-NPTPVCGFNRPTDVEEYEGYRTFNSYCDAYFDN 99
           +P  ++   QP RC  D+     + +   T  CG  RPT      G+    S C+   D+
Sbjct: 23  NPCYDRATRQPQRCVPDFVNAAFNLEVQVTNTCGTKRPTKFCVQSGHTGQRSVCET-CDD 81

Query: 100 CRKGYRY 106
             +G+ +
Sbjct: 82  RHEGFSH 88


>U80029-5|AAB37585.2|  199|Caenorhabditis elegans Hypothetical
           protein T20D4.12 protein.
          Length = 199

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 21  VGKYTTVRLDFINDQYMKFDDPFNEKWNAQPNRCFDDY 58
           VGKY    LD+++D + +  D    K NA+ + CFDD+
Sbjct: 96  VGKYCKA-LDYVHDNFAECSD----KLNAKKSTCFDDW 128


>AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical
           protein C17B7.9 protein.
          Length = 200

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 20  DVGKYTTVRLDFINDQYMKFDDPFNEKWNAQPNRCFDDY 58
           ++GK+     D+++D + K  D    K NA+ + CFDD+
Sbjct: 96  NIGKHCRAT-DYVHDDFAKCSD----KLNAKKSTCFDDW 129


>U80027-13|AAC48130.2|  200|Caenorhabditis elegans Hypothetical
           protein T28A11.18 protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 21  VGKYTTVRLDFINDQYMKFDDPFNEKWNAQPNRCFDDY 58
           +GK+     D+++D + K  D    K NA+ + CFDD+
Sbjct: 97  IGKHCRAT-DYVHDDFAKCSD----KLNAKKSTCFDDW 129


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 79  DVEEYEGYRTFNSYCDAYFDNCRKGYR 105
           D E  E     N YCD    NCR GY+
Sbjct: 166 DCENDEECSASNQYCDLGKCNCRDGYQ 192


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.140    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,840,627
Number of Sequences: 27539
Number of extensions: 232618
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 5
length of query: 154
length of database: 12,573,161
effective HSP length: 76
effective length of query: 78
effective length of database: 10,480,197
effective search space: 817455366
effective search space used: 817455366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)