GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002289-TA|BGIBMGA002289-PA|IPR001304|C-type lectin
         (243 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   1.6  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   1.6  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.1  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory
          receptor candidate 56 protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 9  KSSCGIYTGIHALF 22
          K  C +YT IH LF
Sbjct: 11 KDPCDVYTAIHPLF 24


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory
          receptor candidate 21 protein.
          Length = 386

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 9  KSSCGIYTGIHALF 22
          K  C +YT IH LF
Sbjct: 11 KDPCDVYTAIHPLF 24


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 155 MVGRFWKDIAFIGLHDWNEHG 175
           M  +FW ++A   LH  + HG
Sbjct: 1   MFAKFWVNLALFCLHVQHSHG 21


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,497
Number of Sequences: 317
Number of extensions: 2924
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 243
length of database: 114,650
effective HSP length: 55
effective length of query: 188
effective length of database: 97,215
effective search space: 18276420
effective search space used: 18276420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)