GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002289-TA|BGIBMGA002289-PA|IPR001304|C-type lectin
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    33   0.050
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    29   0.47 
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    27   2.5  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    27   3.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   4.3  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    26   4.3  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   7.6  

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 17/112 (15%)

Query: 3   SLITNKKSSCGIYTGIHALFSRGDFRSIE----------GVLLAKIPHDW-ADYEPDNAG 51
           SL+    +SC I+TG    F R    SI             L+ K+P     DY P N  
Sbjct: 11  SLVEETNASCVIHTGDFGFFERSSLPSISERTLRHIVQFSPLIKKLPRSKNFDYYPSNPI 70

Query: 52  GD-ENCILMYPDGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSVDSEYTLSK 102
           GD +N I  +PD   +++      Q++  +KK S       G+ +  + L K
Sbjct: 71  GDLKNSIASHPDCLLSELP-----QFLSQEKKFSVPVYVVWGACEDVHVLEK 117


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 73  TFQYVCYKKKTSTVAMSSCGSVDSEYTLSKETGNCYKFHKVPRTWSRAYMTCLAEGGYLT 132
           T++ V       TV M +   +  E   S E    +K  KVP  W R  +  + + G  T
Sbjct: 35  TYEGVKNANGNYTVTMIAGDGIGPEIAQSVE--RIFKAAKVPIEWERVKVYPILKNGTTT 92

Query: 133 IINSQQEATFLKELFAKNPASHMVGR 158
           I +  +E+    ++  K P +  +G+
Sbjct: 93  IPDDAKESVRKNKVALKGPLATPIGK 118


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 39  PHDWADYEPDNAGGDENCILMYPDGSFADVN 69
           PH W DYE ++    +NC L   +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 44  DYEPDNAGGDENCILMYPDGSFADVNCTD 72
           +Y PD+     N +L YPDG + + N  D
Sbjct: 247 NYSPDDVAPPPNWVLRYPDG-YTESNMPD 274


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 159 FWKDIAFIGLHDWNEHGEWLTIN 181
           FWK +A    HDW + G + TI+
Sbjct: 440 FWKYVAVPNPHDWPQVGSYDTIS 462


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 6   TNKKSSCGIYTGIHALFSRGDFRSIEGVLLAKI-PHDW-------ADYEPDNAGGDENCI 57
           + KK + G  +G+  LF++GD+      +L+ I  HD+       AD +    GG + CI
Sbjct: 203 SKKKFAVGTASGVITLFTKGDWGDHTDRILSPIRSHDFSIETITRADSDSLYVGGSDGCI 262


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 112 KVPRTWSRAYMTCLAEGGYLTIINSQQEATFLKELFAKNPASHMV 156
           K+ R +S      LA G Y   +   + A  L E FAK   S  V
Sbjct: 749 KISRLYSDMRRESLATGSYPITVRHLESAIRLSEAFAKMQLSEFV 793


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,645
Number of Sequences: 5004
Number of extensions: 53897
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 7
length of query: 243
length of database: 2,362,478
effective HSP length: 71
effective length of query: 172
effective length of database: 2,007,194
effective search space: 345237368
effective search space used: 345237368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)