Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002289-TA|BGIBMGA002289-PA|IPR001304|C-type lectin
(243 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1680 - 39123536-39123628,39123726-39123821,39123941-391240... 31 0.85
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20... 31 1.1
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 3.4
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 29 3.4
10_08_0100 + 14788426-14789097 29 4.5
09_04_0644 + 19181335-19184424 28 6.0
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263 28 6.0
11_04_0409 + 17345182-17345669,17346262-17346760 28 7.9
11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128 28 7.9
08_01_1030 + 10431485-10432390 28 7.9
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 28 7.9
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021... 28 7.9
03_02_0126 - 5769476-5770600 28 7.9
>01_06_1680 -
39123536-39123628,39123726-39123821,39123941-39124093,
39124273-39124382,39124601-39124757,39124867-39124877,
39125138-39125228,39125401-39125496,39125605-39125724,
39125914-39125978,39126066-39126168,39126406-39126631,
39126714-39126790
Length = 465
Score = 31.1 bits (67), Expect = 0.85
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 29 SIEGVLLAKIPHDWADYEPDNAGGDENCILMYPDGSFADVNCTDTFQYVCYKKKTSTVAM 88
SI G L P D+ D EPD + I+ + D C + +C++KK TV
Sbjct: 347 SIYGKQLMIDPQDFQDAEPDILANSASEIINRIKEN--DDQCAMALRSLCHRKKGLTVEE 404
Query: 89 SSCGSVDS 96
+S S+DS
Sbjct: 405 ASLISIDS 412
>01_01_0027 -
205450-206029,206706-207276,207408-207836,208438-208525
Length = 555
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 74 FQYVCYKKKTSTVAMSSCGSVDSEYTLSKETGNCYKFHKVPRTWSRAYMTCLAE-GGYLT 132
F ++ T+T + S+ D + ++ C+ + P +W R+ C +L
Sbjct: 13 FFFILPASLTATASTSTSSCPDG-WQITPALDKCFIYIPTPLSWDRSEALCRNNFTAHLA 71
Query: 133 IINSQQEATFLKELFAKNPASHMVGRFWKDIAFIGLHDWNE 173
++S Q+ K L +P+ VG + A W++
Sbjct: 72 ALSSLQDLNLAKSLCGPSPSGCWVGGHRNNTASAFAWKWSD 112
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 172 NEHGEWLTINGE--TLQEAGYDKWSAGEPNNSTGGEYCGSIYRSALINDLW 220
NEH +W+ ++ TL DK G +C + Y S L N LW
Sbjct: 226 NEHSKWMILDRVRFTLDGLECDKIGVGYEAYRNQPNFCSAPYGSCLGNQLW 276
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 131 LTIINSQQEATFLKELFAKNPASHMVGRFWKDIAFIGLHDWNEHGEWLT-INGETLQEAG 189
+T+ ++ +L E+ +P++ V + D + N WL IN ETL+ A
Sbjct: 247 VTVPRYRENQYYLYEVKVYHPSTSQVEKCLADDPYARGLSANGTRTWLVDINSETLKPAS 306
Query: 190 YDKWSAGEPN 199
+D+ S +PN
Sbjct: 307 WDELSDEKPN 316
>10_08_0100 + 14788426-14789097
Length = 223
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 47 PDNAGGDENCILMYPDGSFADVNCTDTFQY 76
P AGG E C+ YP+G A D Q+
Sbjct: 53 PFTAGGHEWCVDFYPNGKLAAAGDADMIQF 82
>09_04_0644 + 19181335-19184424
Length = 1029
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 43 ADYEPDNAGGDENCILMYPDGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSVDSEYTLSK 102
A P+ G NC ++ PDG + DT ++ + +A + V + T
Sbjct: 300 ATLRPETMYGQTNCWVL-PDGKYGAFEINDTDVFIVTSRAALNLAYQNLSRVPEKPTCLM 358
Query: 103 ETGNC 107
E C
Sbjct: 359 ELSGC 363
>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
Length = 769
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 60 YPDGSFADVN-CTDTFQYVCYKKKTSTVAMSSC 91
Y DG D++ C T +Y C+ K T+T+ +C
Sbjct: 313 YLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTC 345
>11_04_0409 + 17345182-17345669,17346262-17346760
Length = 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 184 TLQEAGYDKWSAGEPNNSTGGEYCGSIYRSALI--NDLWCGRPAPFICEKE-PRSLLRE 239
TL A Y G P G C SAL+ +D++ P+P + P SLL E
Sbjct: 89 TLNRAAYPPSGEGHPLRRRGPHDCVQFLESALVVSDDMFASLPSPRLLSTHLPYSLLPE 147
>11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128
Length = 359
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 180 INGETLQEAGYDKWSAGEPNNSTGGE 205
IN + Q A D++SAG PNN + E
Sbjct: 193 INKQQAQAAAVDQYSAGTPNNGSSVE 218
>08_01_1030 + 10431485-10432390
Length = 301
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 148 AKNPASHMVGRFWKDIAFIGLHDWNEHGEW-LTINGETLQEAGYDKWSAGEPNNSTGGEY 206
A+ A M G F D +W HG+W L GE + D W ++ G+
Sbjct: 194 AEAEAKKMAGTFSYDTE---RGEWTRHGDWLLPFRGEAHYDGELDAWVGLHCDSHRHGKL 250
Query: 207 C 207
C
Sbjct: 251 C 251
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 51 GGDENCILMYPDGSFADVNCTDTFQYVC--YKKKTSTVAMSSCGSVDSEYTLSKETGNCY 108
GG + CI + + A +N DT VC K +SS G ++ TL K +
Sbjct: 3252 GGSDRCIKFWNTHTGACLNSIDTGSQVCSLVWNKNERELLSSHGFAQNQLTLWKYP-SMV 3310
Query: 109 KFHKVPRTWSRAYMTCLAEGGYLTIINSQQEAT 141
K ++ SR T + G LT+ ++ + T
Sbjct: 3311 KMAELTGHTSRVLFTAQSPDG-LTVASAAADET 3342
>03_03_0029 -
13900912-13901457,13901574-13901709,13901961-13902179,
13902429-13902801,13903215-13903458
Length = 505
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 95 DSEYTLSKETGNCYKFHKVPRTWSRAYMTCLAE---GGYLTIINSQQEATFLKELFAKNP 151
D Y + CYKF++ + W ++ ++ L E Y+ I+N E E K+
Sbjct: 258 DDIYDIHATLEECYKFNEAVQRWDKSAVSILPEYLRNFYIRILNDFDEMEDSLEPDEKHR 317
Query: 152 ASHMVGRF 159
S++ F
Sbjct: 318 MSYVKSSF 325
>03_02_0126 - 5769476-5770600
Length = 374
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 167 GLHDWNEHGEW-LTINGETLQEAGYDKW 193
G W HGEW L +G+ + D W
Sbjct: 220 GTRGWTRHGEWMLPFDGQAYYDGELDAW 247
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,426,317
Number of Sequences: 37544
Number of extensions: 371562
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 14
length of query: 243
length of database: 14,793,348
effective HSP length: 80
effective length of query: 163
effective length of database: 11,789,828
effective search space: 1921741964
effective search space used: 1921741964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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