GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002289-TA|BGIBMGA002289-PA|IPR001304|C-type lectin
         (243 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 183 ETLQEAGYDKWSAGEPNNSTGGEYCGSI 210
           ET  +  YD W   +  N T  EY   +
Sbjct: 2   ETSDDDSYDFWKNWDLKNLTEAEYLAKV 29


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 133 IINSQQEATFLKELFAKNPASHMVGRFWKDIAFIGLHD 170
           I+  +  A F+K+++ K     MVG +     F+ L+D
Sbjct: 50  ILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLND 87


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 58   LMYPDGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSVD 95
            L Y   S  D++       + YK+  +T  +   GSV+
Sbjct: 1200 LRYAIPSAGDISIESKSSPLVYKRNINTYTLDGVGSVE 1237


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 159 FWKDIAFIGLHDWNEH 174
           +W++   I LH W+ H
Sbjct: 198 YWREDIGINLHHWHWH 213


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,975
Number of Sequences: 429
Number of extensions: 3793
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 243
length of database: 140,377
effective HSP length: 56
effective length of query: 187
effective length of database: 116,353
effective search space: 21758011
effective search space used: 21758011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)