GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002288-TA|BGIBMGA002288-PA|IPR001304|C-type lectin
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.5  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    28   2.0  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   2.0  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.0  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   7.9  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   7.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   7.9  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 108 PHDWADYEPDNAGDDENCILMNPDGNFADVN 138
           PH W DYE ++    +NC L + +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 207 KEAAFLRDLFAKNPAGQMIGSFWKDVAFIGFHDWNEHGEWLTINGER 253
           K+AAF   + +          FWK VA    HDW + G + TI+  R
Sbjct: 419 KKAAFGSPIGSSTYPTSSPAPFWKYVAVPNPHDWPQVGSYDTISPYR 465


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 142 TFQYVCYKKKTSTVAMASCGSVDSEYVLSKDTGNCYKFHKVPRTWSRAYMACSAEGGYLT 201
           T++ V       TV M +   +  E  +++     +K  KVP  W R  +    + G  T
Sbjct: 35  TYEGVKNANGNYTVTMIAGDGIGPE--IAQSVERIFKAAKVPIEWERVKVYPILKNGTTT 92

Query: 202 IINNDKEAAFLRDLFAKNPAGQMIG 226
           I ++ KE+     +  K P    IG
Sbjct: 93  IPDDAKESVRKNKVALKGPLATPIG 117


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 109  HDWADYEPDNAGDDENCILMNPDG 132
            H  A+Y  D  GDD +C+++N DG
Sbjct: 1320 HQNAEYGYDT-GDDFSCVMVNSDG 1342


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 241 NEHGEWLTINGERLQEAGYEK 261
           NEHG  LT+  E L+   YEK
Sbjct: 84  NEHGNNLTLQEELLRHEAYEK 104


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 151 KTSTVAMASCGSVDSEYVLSKDTGNCYKFHKVP 183
           KTS V      ++    ++ KD+ + YK++K P
Sbjct: 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP 385


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 25   DYTYFRDINGWLKLQEIPANWQEARLRCHL 54
            D+ +F + NGW   Q    NW+     C L
Sbjct: 1049 DFAFFVNTNGWKSRQSWMINWEGQPQGCAL 1078


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,394
Number of Sequences: 5004
Number of extensions: 69964
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 7
length of query: 312
length of database: 2,362,478
effective HSP length: 73
effective length of query: 239
effective length of database: 1,997,186
effective search space: 477327454
effective search space used: 477327454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)