GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002288-TA|BGIBMGA002288-PA|IPR001304|C-type lectin
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1680 - 39123536-39123628,39123726-39123821,39123941-391240...    36   0.042
12_01_0326 - 2520743-2520926,2521019-2521107,2522039-2522500           33   0.39 
08_01_1030 + 10431485-10432390                                         30   2.7  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    30   2.7  
11_06_0037 - 19478885-19480472,19483125-19483267                       28   8.4  

>01_06_1680 -
           39123536-39123628,39123726-39123821,39123941-39124093,
           39124273-39124382,39124601-39124757,39124867-39124877,
           39125138-39125228,39125401-39125496,39125605-39125724,
           39125914-39125978,39126066-39126168,39126406-39126631,
           39126714-39126790
          Length = 465

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 98  SVEGVPLANIPHDWADYEPDNAGDDENCILMNPDGNFADVNCTETFQYVCYKKKTSTVAM 157
           S+ G  L   P D+ D EPD   +  + I+     N  D  C    + +C++KK  TV  
Sbjct: 347 SIYGKQLMIDPQDFQDAEPDILANSASEIINRIKEN--DDQCAMALRSLCHRKKGLTVEE 404

Query: 158 ASCGSVDS 165
           AS  S+DS
Sbjct: 405 ASLISIDS 412


>12_01_0326 - 2520743-2520926,2521019-2521107,2522039-2522500
          Length = 244

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 10/161 (6%)

Query: 64  DDALKSGMLSLIKNKTSCGIFT----GIHATFSKGDYRS--VEGVPLANIPHDWADYEPD 117
           DD  +S   S+++  TS G +T    G HAT+S  DY+S  +  V +  +      Y   
Sbjct: 73  DDDGRSSPPSVVEYGTSPGEYTASATGDHATYSYSDYKSGAIHHVTIGPLEPATTYYYRC 132

Query: 118 NAGDDENCILMNPDGNFADVNCTETFQYVCYKKKTSTVAMASCGSVD---SEYVLSKDTG 174
            AG++E   L  P         T  +      +    + +   G+VD    +++   +  
Sbjct: 133 GAGEEEELSLRTPPAKLPVEFVTRIYDNEANSQGPMYITIGDGGNVDGHSDKFIEDHELA 192

Query: 175 NCYKFHKVPRTWSRAYMACSAEGGYLTIINNDKEAAFLRDL 215
           +  +F ++     R  +    +  + T   ND + A +RD+
Sbjct: 193 HLSEFREMSFGHGRLRIVSETKAIW-TWHRNDDQHATVRDV 232


>08_01_1030 + 10431485-10432390
          Length = 301

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 217 AKNPAGQMIGSFWKDVAFIGFHDWNEHGEW-LTINGERLQEAGYEKWSGGEPNNSSNGEY 275
           A+  A +M G+F  D       +W  HG+W L   GE   +   + W G   ++  +G+ 
Sbjct: 194 AEAEAKKMAGTFSYDTER---GEWTRHGDWLLPFRGEAHYDGELDAWVGLHCDSHRHGKL 250

Query: 276 C 276
           C
Sbjct: 251 C 251


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 241 NEHGEWLTINGERLQEAGYE--KWSGGEPNNSSNGEYCGSIYRSALFNDLW 289
           NEH +W+ ++  R    G E  K   G     +   +C + Y S L N LW
Sbjct: 226 NEHSKWMILDRVRFTLDGLECDKIGVGYEAYRNQPNFCSAPYGSCLGNQLW 276


>11_06_0037 - 19478885-19480472,19483125-19483267
          Length = 576

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 182 VPRTWSRAYMACSAEGGYLTIINNDKEAA------FLRDLFAKNPAGQMIGSFWKDVAFI 235
           +PR+W   + +C+ +G  L +     E+       FL DL  + PA + I +FW   + +
Sbjct: 365 LPRSW---HSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWKEIPTFWSPPSRL 421

Query: 236 G 236
           G
Sbjct: 422 G 422


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.136    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,033
Number of Sequences: 37544
Number of extensions: 466215
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 6
length of query: 312
length of database: 14,793,348
effective HSP length: 82
effective length of query: 230
effective length of database: 11,714,740
effective search space: 2694390200
effective search space used: 2694390200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)