GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002287-TA|BGIBMGA002287-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    28   2.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   6.5  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   6.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   8.6  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    26   8.6  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 221 VLALLRPFLNEDAIPDAVSALFLWLGYLNSLLNPIIYATLNR 262
           VL LL    +ED  PDA+++LF  L  ++S L P++  T+ R
Sbjct: 165 VLELLIELTDEDVDPDALNSLFTSL--IDSGLLPLLSNTIKR 204


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 202  STTLGIIMSAFIVCWLPFFVLALLRPFLNEDAIPDAVSALFLWLGYLNSLLNPIIYATLN 261
            S  LG+++SAF V  L      ++  F+    +P    A+    G+ N  L+    + L 
Sbjct: 1395 SANLGVVVSAFRVVVLLTSASEMIHTFVKLSGLPSLFKAMRACSGFCNESLHIPFISILR 1454

Query: 262  R 262
            R
Sbjct: 1455 R 1455


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 209 MSAFIVCWLPFFVLALLRPFLNEDAIPDAVSALFLWLGYLNSLLNPII 256
           +S   +C  P  V  L R  + +  + ++  +  LWL  + SLL P+I
Sbjct: 545 LSGLALCHDPVIVTKLCR--IGQKCVDNSSESRTLWLDIIRSLLLPLI 590


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 139 RAQSHLEAHCYLEINVKNGGATEAKLLGAQTTTQPPRGSTASTNTTSPHQKKLRFQLAKE 198
           R+ SH + +   E  ++N  A+ A + G Q + Q   GST  T+ +S   K    Q+   
Sbjct: 196 RSWSHSDVN---EEEIQNLLASSANVDGVQNSVQANEGSTVQTD-SSAISKNDNVQVETS 251

Query: 199 RKASTTLGII---MSAFIVCWLPFFVLALLRPFL 229
            +     G     +S FIV  L FF   L   F+
Sbjct: 252 NEEVGGFGAASSKISKFIVLLLDFFSPPLYSLFI 285


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 261 NRDFRKPFQEILF--FRCSNLNHMMREEFYHSQYG---DPDHYCVNNTTK 305
           N +F+K     +F  + C  LNH++ E+F + QY    DP+      T++
Sbjct: 875 NFEFKKKSGGKVFISYPCVMLNHLVHEKFTNHQYSALKDPEKLVYETTSE 924


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 152 INVKNGGATEAKLLGAQTTTQPPRGSTASTNTTSPHQ 188
           ++  +G AT A   G+ TTT     S+AS++++S H+
Sbjct: 362 VSATSGSATSAT--GSATTTSYSSDSSASSSSSSSHE 396


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,876
Number of Sequences: 5004
Number of extensions: 63311
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 7
length of query: 331
length of database: 2,362,478
effective HSP length: 73
effective length of query: 258
effective length of database: 1,997,186
effective search space: 515273988
effective search space used: 515273988
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)