Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002287-TA|BGIBMGA002287-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0099 - 26421441-26421716,26422318-26422527 31 0.97
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493... 31 1.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 2.3
01_01_0508 + 3710435-3710980,3711086-3711238,3711323-3711408,371... 29 3.9
05_04_0154 - 18549806-18550161,18550271-18550907 29 5.2
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 29 5.2
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 29 5.2
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 29 6.9
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 28 9.1
10_02_0174 - 6202334-6204922 28 9.1
08_02_0934 + 22747742-22748644 28 9.1
07_03_1614 + 28152812-28153204,28153301-28153585,28153676-281539... 28 9.1
>01_06_0099 - 26421441-26421716,26422318-26422527
Length = 161
Score = 31.5 bits (68), Expect = 0.97
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 92 ETSCSVSQNQYYQVYATLGSFYIPLTVMVI 121
E CS+S QYY+V+ LG + L++ +I
Sbjct: 75 ELDCSLSSKQYYKVFVALGMSFCLLSLFII 104
>06_03_0056 -
16046535-16047309,16047625-16048784,16049233-16049340,
16049487-16049672,16050342-16050398
Length = 761
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 18 VICDFWVSSDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPRRMLFCVFIVWISAAF 77
VIC+ W + L T+ SV + I+ PL G KR + +++
Sbjct: 332 VICN-WCKDNELEFTSLPEQFHSYSVSSLHNISAPLVAGTKRDYMSDHSSSSVALSGSSY 390
Query: 78 ISLPPVLILGNEKTETSCSVSQNQYYQVYATLGSF 112
+S P + E S N YYQ+Y + SF
Sbjct: 391 VSSP--MRETEESRTNSTQFFSNAYYQLYLSFSSF 423
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 157 GGATEAKLLGAQTTTQPPRGSTASTNTTSPHQKKLRFQLAKERKASTTLGI 207
G E K+ AQ++T P + +T + T+P Q+ R Q AKE K S + +
Sbjct: 907 GPLPEHKVYDAQSSTSPFQDATMKSEDTTPQQR--RGQGAKETKLSDSASL 955
>01_01_0508 +
3710435-3710980,3711086-3711238,3711323-3711408,
3711533-3711617,3711705-3711824,3711906-3711974,
3712088-3712217,3712336-3712406
Length = 419
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 176 GSTASTNTTSPHQKKLRFQLAKERKASTTL-GIIMSAFIVCWLP-FFVLALLRPFLNEDA 233
G T T+ K+ KAS +++SAF + P VL L P + A
Sbjct: 192 GHMLGTVFTNMSLSKVAVSFTHTIKASEPFFTVLLSAFFLGETPSLLVLGSLVPIVGGVA 251
Query: 234 IPDAVSALFLWLGYLNSLLNPIIYATLN 261
+ F W+G+ +++ + ++Y + N
Sbjct: 252 LASLTELSFNWIGFWSAMASNLLYQSRN 279
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 159 ATEAKLLGAQTTTQPPRGSTASTNTTSPHQKKLRFQLAKERKA 201
A + +LLG+QTTT R ST++ T Q+A R A
Sbjct: 177 AKKPRLLGSQTTTTTSRTSTSNATTPRSFDTSSSHQVASFRDA 219
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 73 ISAAFISLPPVLILGNEKTETSCSVSQNQYYQVYATLGSFYIPLTVMVIVYYKIFRAARK 132
I+A ISLP ILG + T+ S+ +Y +YAT+ ++ + Y +A
Sbjct: 328 IAALAISLPFSCILGLFSSLTTTSMVARRYVWIYATIQFLFVVFFTHLFYRYLHLQAVIS 387
Query: 133 IV 134
I+
Sbjct: 388 II 389
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 174 PRGSTASTNTTSPHQKKLRFQLAKERKASTTLGIIMSAFIVCWL 217
PRG+ + + + + K +F A + LG+ MS F+ WL
Sbjct: 333 PRGTIGNVHEKNVCRPKDKFTFALKAVTGVGLGVFMSVFMAFWL 376
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/62 (20%), Positives = 31/62 (50%)
Query: 133 IVKDEKRAQSHLEAHCYLEINVKNGGATEAKLLGAQTTTQPPRGSTASTNTTSPHQKKLR 192
+++DEKR ++ + N + + ++ ++PP+ T+ NT + H KK++
Sbjct: 56 VIEDEKRVDTYSPQIIEFLNSKSNNCEIDGENRPEESNSRPPQEVTSDGNTINGHPKKVK 115
Query: 193 FQ 194
+
Sbjct: 116 LE 117
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 28.3 bits (60), Expect = 9.1
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 150 LEINVKNGGATEAKLLGAQTTTQPPRGSTASTNTTSPHQKKLRFQLAKERKASTTLGIIM 209
L++ V +GGATE K G T Q S ST + +++ ++S+
Sbjct: 246 LDLLVSSGGATEVK--GPPITRQRVNESEVSTRPDESQESGSGSDASEDVESSSNSSNCT 303
Query: 210 SAFIVCWLPFFVLALLRPFLNEDAIP-DAVSALFLWLGYLNS 250
V P + L P + A+P +A+S LF +L S
Sbjct: 304 KELPVEHYPPVQVLELPPSSGDIAVPEEAISYLFSVYNFLRS 345
>10_02_0174 - 6202334-6204922
Length = 862
Score = 28.3 bits (60), Expect = 9.1
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 212 FIVCWLPFFVLALLRPFLNEDAIPDAVSALFLWLGYLNSL-LNPIIYATLNRD 263
F+ WL FFV LRP E +PD AL L + L P + A L D
Sbjct: 192 FLAYWLAFFVTPRLRPRSGE--LPDCTFALAARLSLGERIALGPAMVANLYAD 242
>08_02_0934 + 22747742-22748644
Length = 300
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 157 GGATEAKLLGAQTTTQPPRGSTASTNTTSPHQKKLRFQLAKERKASTTLGI 207
GG E +LG +T +++S+++ SPH++ R Q A++ S L +
Sbjct: 252 GGGEEPVVLGGAGSTSFSPSTSSSSSSASPHER--RAQPARKENVSLDLSL 300
>07_03_1614 +
28152812-28153204,28153301-28153585,28153676-28153993,
28154657-28154884,28155390-28155490,28156204-28156321,
28156445-28156726
Length = 574
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 129 AARKIVKDEKRAQSHLEAHCYLEINVKNGGATEAKLLGAQTTTQPP 174
AA VK E+R++S AH + V+ GG+ K G Q P
Sbjct: 59 AAGPPVKRERRSRSSRSAHAHAHAEVRIGGSFANKARGEQVAAGWP 104
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.137 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,363,031
Number of Sequences: 37544
Number of extensions: 364034
Number of successful extensions: 1022
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 12
length of query: 331
length of database: 14,793,348
effective HSP length: 82
effective length of query: 249
effective length of database: 11,714,740
effective search space: 2916970260
effective search space used: 2916970260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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