GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002286-TA|BGIBMGA002286-PA|IPR013099|Ion transport 2,
IPR004827|Basic-leucine zipper (bZIP) transcription factor,
IPR003280|K+ channel, two pore
         (1117 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    28   0.41 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    28   0.41 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   1.7  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   5.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   5.0  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 0.41
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 399 NKPIVVKQIHKHGKDEHGKVPPVKPAR--SKSVS------RLGNKTSESEMSEDQGNQRN 450
           N P+V+  I  H    HG  PP  P +  +K  S      +L   T+ S    DQ  +R 
Sbjct: 15  NVPVVLDVIPPHYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTSSVNVNDQNIRRY 74

Query: 451 LAASSKRRAVPPPRRFVKHSPRANRSQSIHKVEDLRADKSEIGMSQTSREIMELMQK 507
             A ++ +     + F K +   +R +       L   +S I +   +R + +  Q+
Sbjct: 75  RTAFTREQLARLEKEFFKEN-YVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR 130


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 0.41
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 140 AARQREKTPEPSRTPVPHEDTTTSDDEEMKAPPSPREIEADDTYEEMRRLVQEQANTKDP 199
           A +  E  PEP  TP P + T T++ E  +A   P   E+  T +       E  N  D 
Sbjct: 385 ALKSDEIPPEPVPTPEP-QPTQTTESEPTQASEQP--TESSTTQKPQTTKTPESGNESDG 441

Query: 200 V 200
           V
Sbjct: 442 V 442


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 147 TPEPSRTPVPHEDTTTSDDE-EMKAPPSPREIEADDTYEEMRRLVQEQANTKD 198
           TP  + +P P E+   S    ++  P SPR I  D      R L   + N+++
Sbjct: 38  TPNSAASPAPPEEEAASPTPGDVPTPSSPRSISEDPL--NCRDLPNSRCNSRE 88


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 134 SKNRGQAARQREKTPEPSRTPVP-HEDTTTSDDEE 167
           SK   +A  +    PE SRTP+    D T SD EE
Sbjct: 156 SKVFAKAREEATVVPEGSRTPIEIPRDYTASDLEE 190


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 706 NWRQFKHEQRIEYEKIKLLRNRC 728
           N  Q  H+Q + +E++  + NRC
Sbjct: 312 NMHQQHHQQNMSHEELSAMVNRC 334


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,583
Number of Sequences: 317
Number of extensions: 9608
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 7
length of query: 1117
length of database: 114,650
effective HSP length: 64
effective length of query: 1053
effective length of database: 94,362
effective search space: 99363186
effective search space used: 99363186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)