Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002285-TA|BGIBMGA002285-PA|undefined
(155 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 27 1.7
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 27 1.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 3.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 5.2
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 25 5.2
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 25 5.2
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 30 DSIIPITPMTARSQGTGSVYWDPKFHVKPPG 60
D + P P + + Q GS Y P+ P G
Sbjct: 274 DYVAPFKPFSGKGQRLGSTYMQPRMSQMPGG 304
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 1.7
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 49 YWDPKFHVKPPGTPGSHISDPHGHFNPFMHMYHNKASEFMFK-QFEGFKDFTMNTAKSGL 107
+ DP++ + P P S + D G P + H+ +SE+ K QF+ + T A+ L
Sbjct: 599 FLDPQWANQLPRQPDSSVFDHQGRNPPIQGLSHDTSSEYGNKSQFKRLRS-TSTPARQDL 657
Query: 108 S 108
+
Sbjct: 658 A 658
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 VYWDPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
++ +P H+ PP PG H+ P H P HM
Sbjct: 225 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 259
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 VYWDPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
++ +P H+ PP PG H+ P H P HM
Sbjct: 238 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 272
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 VYWDPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
++ +P H+ PP PG H+ P H P HM
Sbjct: 251 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 285
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 VYWDPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
++ +P H+ PP PG H+ P H P HM
Sbjct: 264 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 298
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 VYWDPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
++ +P H+ PP PG H+ P H P HM
Sbjct: 277 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 311
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 VYWDPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
++ +P H+ PP PG H+ P H P HM
Sbjct: 290 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 324
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 48 VYWDPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
++ +P H+ PP PG H+ P H P HM
Sbjct: 303 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 337
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 51 DPKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
+P H+ PP PG H+ P H P HM
Sbjct: 202 EPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHM 233
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 52 PKFHVKPPGT---PGSHISDPHGHFNPFMHM 79
P H+ PP PG H+ P H P HM
Sbjct: 216 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 246
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 41 RSQGTGSVYWDPKFHVKPPGTPGSHISDPH 70
R GSV +P F + G+P + I +PH
Sbjct: 1586 RGPSAGSVEREPLFLIAASGSPHAFIWNPH 1615
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 91 QFEGFKDFTMNTAKSGLSAGEKTAFWV-YNKLK 122
+ EGF+ + S L GE T WV Y K K
Sbjct: 214 RLEGFRGLYKGLSASLLGVGESTLQWVLYEKFK 246
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 121 LKLLSRRWFTHLFLSMCLALYSVM 144
+ LL + +F HLF CL L+ V+
Sbjct: 279 MNLLKKAFFDHLFGRHCLLLFQVI 302
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.135 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,069
Number of Sequences: 5004
Number of extensions: 26702
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 15
length of query: 155
length of database: 2,362,478
effective HSP length: 67
effective length of query: 88
effective length of database: 2,027,210
effective search space: 178394480
effective search space used: 178394480
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 50 (24.2 bits)
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