GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002285-TA|BGIBMGA002285-PA|undefined
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150...    29   1.7  
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913...    29   2.2  
02_05_0793 - 31782203-31782355,31782958-31783096,31783407-317837...    27   6.8  

>09_02_0504 -
           10013784-10014041,10014558-10014660,10014932-10015093,
           10015416-10015549,10015633-10015716,10015839-10016129,
           10016362-10016694,10016823-10016965,10017273-10017429,
           10017513-10017616,10017728-10017888,10017971-10018287,
           10018396-10018677,10018759-10019226,10019338-10019391,
           10019689-10019742,10019943-10020021,10020108-10020196,
           10021153-10021273,10022321-10022637
          Length = 1236

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 102 TAKSGLSAGEKTAFWVYNKLKLLSRRWFTHLFLSMCLALYSVMGAAIFV 150
           T+K G+S  E     +Y ++ L+ R  F ++F ++ L L ++    +F+
Sbjct: 453 TSKYGVSMKELLKANIYREILLMKRNSFLYIFKAIQLKLVAINAMTVFI 501


>06_01_1109 +
           9127761-9127976,9128084-9128290,9129539-9129753,
           9131665-9131904,9133372-9133570,9134666-9134992,
           9135977-9136070,9136307-9136320
          Length = 503

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 26  LQMPDSIIPITPMTARSQGTGSVYWDPKFHV---KPPGTPGSHISDPHGHFN 74
           +Q+ D+I+      A++    S Y  P  +V   KP G  G  I  P+G FN
Sbjct: 223 VQVLDAIVSYDSRDAKATRAASKYIPPGGYVQFLKPDGLKGKRIGIPNGFFN 274


>02_05_0793 -
           31782203-31782355,31782958-31783096,31783407-31783710,
           31783820-31783983,31784105-31784327,31784697-31784937,
           31786053-31786182,31786272-31786900
          Length = 660

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 109 AGEKTAFWVYNKLKLLSRRWFTHLFLSMCLALYSVMGAAIFVTLE 153
           AG +T   +      L    F    L+MC+A Y   G+ + +TLE
Sbjct: 252 AGVRTVLDIECGFGTLGAHLFQRDLLTMCIANYEASGSQVQITLE 296


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,255,303
Number of Sequences: 37544
Number of extensions: 167722
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 3
length of query: 155
length of database: 14,793,348
effective HSP length: 76
effective length of query: 79
effective length of database: 11,940,004
effective search space: 943260316
effective search space used: 943260316
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 56 (26.6 bits)