GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002285-TA|BGIBMGA002285-PA|undefined
         (155 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35385| Best HMM Match : SRP54_N (HMM E-Value=7.2)                   30   0.99 
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                29   1.7  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_41877| Best HMM Match : Agenet (HMM E-Value=1.9)                    27   7.0  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               27   7.0  
SB_8129| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=7.2)            27   7.0  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_51288| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_35385| Best HMM Match : SRP54_N (HMM E-Value=7.2)
          Length = 257

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 77  MHMYHNKASEFMFKQFEGFKDFTMNTAKSGLS--AGEKTAF-WVYNKLKLLSRRW 128
           M ++H+  +EF  + FE F+  T  T KS LS  +G K  +   ++ + LL+ RW
Sbjct: 158 MGIFHDTVAEFCTQYFERFRRQTHVTPKSYLSFISGYKQIYSQQHSDIDLLATRW 212


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 52  PKFHVKPPGTPGSHISDPHGHFNPFMH 78
           P+ HV+P  T  +  S+PH H NP  H
Sbjct: 452 PEEHVEPEPTLATGSSNPHHHGNPHPH 478


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 12/56 (21%)

Query: 59   PGTPGSHISDPH--GHFNPFMHMYHNKASEFMFKQFEGFKDFTMNTAKSGLSAGEK 112
            P    +H++D H  GH +P+   YHN        +FEGF  ++ +   + +SAGE+
Sbjct: 1233 PHRKDAHLTDAHKEGHVHPY--SYHN-------SRFEGF-PYSRDMIVTSMSAGER 1278


>SB_41877| Best HMM Match : Agenet (HMM E-Value=1.9)
          Length = 237

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 72  HFNPFMHMYHNKASEFMFKQFEGFKDFTMNTAKSGLSAGEKTAFW 116
           H  P  H YH+   E  F Q  G    +     +G S   KT  W
Sbjct: 188 HLTPDSHQYHHAPVERNFSQVSGSSCDSGYHGGAGNSRKRKTGLW 232


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 27  QMPDSI--IPITPMTARSQGTGSVYWDPKFHVKPPGTPGSHISDPHGHFNPFMHMYHN 82
           Q+P  +  +PIT +  R     SV      +V+PP        DP G+   + H YH+
Sbjct: 85  QLPSHVRAVPITSLPNRLI-VNSVPMATPTYVQPPSNEADLPLDPTGNHRHYHHHYHH 141


>SB_8129| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=7.2)
          Length = 185

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 65  HISDPHGHFNPFMHMYHNKASEFMFKQFEGFKDFTMNT 102
           H S  H  F P +H + +  +E   + FE   D T  T
Sbjct: 26  HASISHAPFLPRLHFHRSSNAETFERMFEKITDITKKT 63


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 72  HFNPFMHMYHNKASEFMFKQFEGFKDFTMNTAKSGLSAGEKTAFW 116
           H  P  H YH+   E  F Q  G    +     +G S   KT  W
Sbjct: 524 HLTPDSHQYHHAPVERNFSQVSGSSCDSGYHGGAGNSRKRKTGLW 568


>SB_51288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)

Query: 52 PKFHVKPPG----TPGSHISDPHGH 72
          P+ HV  PG    TPG H+S P  H
Sbjct: 27 PRDHVTTPGDHVTTPGDHVSTPGDH 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,738,438
Number of Sequences: 59808
Number of extensions: 191407
Number of successful extensions: 463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 46
length of query: 155
length of database: 16,821,457
effective HSP length: 76
effective length of query: 79
effective length of database: 12,276,049
effective search space: 969807871
effective search space used: 969807871
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 56 (26.6 bits)