GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002285-TA|BGIBMGA002285-PA|undefined
         (155 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025323-1|AAH25323.1|  706|Homo sapiens transmembrane channel-l...    29   5.2  
AY263166-1|AAP78781.1|  706|Homo sapiens TMC4 protein protein.         29   5.2  
AY236492-1|AAP69870.1|  712|Homo sapiens transmembrane channel-l...    29   5.2  
BC009743-1|AAH09743.1|  531|Homo sapiens coiled-coil domain cont...    29   9.1  
BC002787-1|AAH02787.1|  531|Homo sapiens coiled-coil domain cont...    29   9.1  

>BC025323-1|AAH25323.1|  706|Homo sapiens transmembrane channel-like
           4 protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 58  PPGTPGSHISDPHGHFNP 75
           PPG PG  IS P G +NP
Sbjct: 189 PPGPPGPDISSPCGSYNP 206


>AY263166-1|AAP78781.1|  706|Homo sapiens TMC4 protein protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 58  PPGTPGSHISDPHGHFNP 75
           PPG PG  IS P G +NP
Sbjct: 189 PPGPPGPDISSPCGSYNP 206


>AY236492-1|AAP69870.1|  712|Homo sapiens transmembrane channel-like
           protein 4 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 58  PPGTPGSHISDPHGHFNP 75
           PPG PG  IS P G +NP
Sbjct: 195 PPGPPGPDISSPCGSYNP 212


>BC009743-1|AAH09743.1|  531|Homo sapiens coiled-coil domain
           containing 9 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 27  QMPDSIIPITPMTARSQGTGSVYWDPKFHVKPPGTPGSHISDPHGH 72
           Q P++     P + ++ G      +P    + PGTP S  S P GH
Sbjct: 451 QAPEAAPTGIPCSEQAHGVPFSPEEPLLEPQAPGTPSSPFSPPSGH 496


>BC002787-1|AAH02787.1|  531|Homo sapiens coiled-coil domain
           containing 9 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 27  QMPDSIIPITPMTARSQGTGSVYWDPKFHVKPPGTPGSHISDPHGH 72
           Q P++     P + ++ G      +P    + PGTP S  S P GH
Sbjct: 451 QAPEAAPTGIPCSEQAHGVPFSPEEPLLEPQAPGTPSSPFSPPSGH 496


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.135    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,285,733
Number of Sequences: 224733
Number of extensions: 993733
Number of successful extensions: 2417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2412
Number of HSP's gapped (non-prelim): 5
length of query: 155
length of database: 73,234,838
effective HSP length: 84
effective length of query: 71
effective length of database: 54,357,266
effective search space: 3859365886
effective search space used: 3859365886
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 61 (28.7 bits)