Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002285-TA|BGIBMGA002285-PA|undefined
(155 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77667-7|CAB01238.2| 534|Caenorhabditis elegans Hypothetical pr... 31 0.48
U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of ... 29 2.0
U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of ... 29 2.0
U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of ... 29 2.0
AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative pota... 29 2.0
AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative pota... 29 2.0
AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative pota... 29 2.0
Z82073-3|CAB04926.1| 631|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 4.5
Z70311-2|CAA94374.1| 366|Caenorhabditis elegans Hypothetical pr... 27 6.0
>Z77667-7|CAB01238.2| 534|Caenorhabditis elegans Hypothetical
protein M04B2.5 protein.
Length = 534
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 112 KTAFWVYNKLKLLSRRWFTHLFLSMCLALYSVMGAAIFVTLESK 155
K+ +W + K + F H+ + + + LY+++GAA+F ++ES+
Sbjct: 124 KSFYWFAHNHKKIG---FRHVCMLLLVLLYTLLGAALFFSIESR 164
>U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform e protein.
Length = 544
Score = 28.7 bits (61), Expect = 2.0
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 34 PITPMTARSQGTGSVYWDPKFHV-KPPGTPGSHI-SDPHGHFNPFMHMYHN--KASEFMF 89
P +T+ + G G + P +H KPP P S S P + N HN ++ +F F
Sbjct: 37 PRPSITSATIGVGDPFI-PYYHYRKPPSRPPSRPPSKPPSNRNSAALSRHNTVRSHQFAF 95
Query: 90 KQFE--GFKDFTMNTAKSGLSAGEKTAFWV----YNKLKLLSRRWFTHLFLSMCLALYSV 143
E G + + G+ + V + ++ L + H+ L++ L Y
Sbjct: 96 AYDENIGRVKWEEYNRREGIEDVPEQPIVVRVPIWRRILKLLKILLPHVGLNVLLLSYIA 155
Query: 144 MGAAIFVTLES 154
MGA +F+ LE+
Sbjct: 156 MGATVFIWLEA 166
>U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform c protein.
Length = 576
Score = 28.7 bits (61), Expect = 2.0
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 34 PITPMTARSQGTGSVYWDPKFHV-KPPGTPGSHI-SDPHGHFNPFMHMYHN--KASEFMF 89
P +T+ + G G + P +H KPP P S S P + N HN ++ +F F
Sbjct: 37 PRPSITSATIGVGDPFI-PYYHYRKPPSRPPSRPPSKPPSNRNSAALSRHNTVRSHQFAF 95
Query: 90 KQFE--GFKDFTMNTAKSGLSAGEKTAFWV----YNKLKLLSRRWFTHLFLSMCLALYSV 143
E G + + G+ + V + ++ L + H+ L++ L Y
Sbjct: 96 AYDENIGRVKWEEYNRREGIEDVPEQPIVVRVPIWRRILKLLKILLPHVGLNVLLLSYIA 155
Query: 144 MGAAIFVTLES 154
MGA +F+ LE+
Sbjct: 156 MGATVFIWLEA 166
>U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform d protein.
Length = 562
Score = 28.7 bits (61), Expect = 2.0
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 34 PITPMTARSQGTGSVYWDPKFHV-KPPGTPGSHI-SDPHGHFNPFMHMYHN--KASEFMF 89
P +T+ + G G + P +H KPP P S S P + N HN ++ +F F
Sbjct: 37 PRPSITSATIGVGDPFI-PYYHYRKPPSRPPSRPPSKPPSNRNSAALSRHNTVRSHQFAF 95
Query: 90 KQFE--GFKDFTMNTAKSGLSAGEKTAFWV----YNKLKLLSRRWFTHLFLSMCLALYSV 143
E G + + G+ + V + ++ L + H+ L++ L Y
Sbjct: 96 AYDENIGRVKWEEYNRREGIEDVPEQPIVVRVPIWRRILKLLKILLPHVGLNVLLLSYIA 155
Query: 144 MGAAIFVTLES 154
MGA +F+ LE+
Sbjct: 156 MGATVFIWLEA 166
>AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-1 protein.
Length = 562
Score = 28.7 bits (61), Expect = 2.0
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 34 PITPMTARSQGTGSVYWDPKFHV-KPPGTPGSHI-SDPHGHFNPFMHMYHN--KASEFMF 89
P +T+ + G G + P +H KPP P S S P + N HN ++ +F F
Sbjct: 37 PRPSITSATIGVGDPFI-PYYHYRKPPSRPPSRPPSKPPSNRNSAALSRHNTVRSHQFAF 95
Query: 90 KQFE--GFKDFTMNTAKSGLSAGEKTAFWV----YNKLKLLSRRWFTHLFLSMCLALYSV 143
E G + + G+ + V + ++ L + H+ L++ L Y
Sbjct: 96 AYDENIGRVKWEEYNRREGIEDVPEQPIVVRVPIWRRILKLLKILLPHVGLNVLLLSYIA 155
Query: 144 MGAAIFVTLES 154
MGA +F+ LE+
Sbjct: 156 MGATVFIWLEA 166
>AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-3 protein.
Length = 544
Score = 28.7 bits (61), Expect = 2.0
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 34 PITPMTARSQGTGSVYWDPKFHV-KPPGTPGSHI-SDPHGHFNPFMHMYHN--KASEFMF 89
P +T+ + G G + P +H KPP P S S P + N HN ++ +F F
Sbjct: 37 PRPSITSATIGVGDPFI-PYYHYRKPPSRPPSRPPSKPPSNRNSAALSRHNTVRSHQFAF 95
Query: 90 KQFE--GFKDFTMNTAKSGLSAGEKTAFWV----YNKLKLLSRRWFTHLFLSMCLALYSV 143
E G + + G+ + V + ++ L + H+ L++ L Y
Sbjct: 96 AYDENIGRVKWEEYNRREGIEDVPEQPIVVRVPIWRRILKLLKILLPHVGLNVLLLSYIA 155
Query: 144 MGAAIFVTLES 154
MGA +F+ LE+
Sbjct: 156 MGATVFIWLEA 166
>AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-2 protein.
Length = 576
Score = 28.7 bits (61), Expect = 2.0
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 34 PITPMTARSQGTGSVYWDPKFHV-KPPGTPGSHI-SDPHGHFNPFMHMYHN--KASEFMF 89
P +T+ + G G + P +H KPP P S S P + N HN ++ +F F
Sbjct: 37 PRPSITSATIGVGDPFI-PYYHYRKPPSRPPSRPPSKPPSNRNSAALSRHNTVRSHQFAF 95
Query: 90 KQFE--GFKDFTMNTAKSGLSAGEKTAFWV----YNKLKLLSRRWFTHLFLSMCLALYSV 143
E G + + G+ + V + ++ L + H+ L++ L Y
Sbjct: 96 AYDENIGRVKWEEYNRREGIEDVPEQPIVVRVPIWRRILKLLKILLPHVGLNVLLLSYIA 155
Query: 144 MGAAIFVTLES 154
MGA +F+ LE+
Sbjct: 156 MGATVFIWLEA 166
>Z82073-3|CAB04926.1| 631|Caenorhabditis elegans Hypothetical
protein W06D12.5 protein.
Length = 631
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 111 EKTAFWVYNKLKLLSRRWFTHLFLSMCLALYSVMGAAIFVTLESK 155
+K+ +W K + F H + + + LY+++GA +F T+ES+
Sbjct: 199 DKSMYWFAFHRKQIG---FRHFSVVILVLLYTLLGAVMFWTVESR 240
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 55 HVKPPGTPGSHISDPHGHFNPFMHMYHNK 83
H P G H S HGH +P H +H +
Sbjct: 432 HHHAPAHHGHHESHGHGHHSPAHHGHHGE 460
>Z70311-2|CAA94374.1| 366|Caenorhabditis elegans Hypothetical
protein T25B9.2 protein.
Length = 366
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 66 ISDPHGHFNPFMHMYHNKASEFMFKQFEGFKDFTMNTAKSG 106
+ D HG F+ + M ++FE KD T+ + ++G
Sbjct: 36 MGDIHGQFDDLLAMLDMNGWPLSSQEFEALKDITVRSRETG 76
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.135 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,953
Number of Sequences: 27539
Number of extensions: 150249
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 11
length of query: 155
length of database: 12,573,161
effective HSP length: 76
effective length of query: 79
effective length of database: 10,480,197
effective search space: 827935563
effective search space used: 827935563
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 56 (26.6 bits)
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