GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002284-TA|BGIBMGA002284-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
         (485 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   2.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.6  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   6.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   6.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 125  DSFDYKKNDCVCKNRRRVVWK 145
            D++D+++N    + R  V WK
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWK 1552


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 125  DSFDYKKNDCVCKNRRRVVWK 145
            D++D+++N    + R  V WK
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWK 1552


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 125  DSFDYKKNDCVCKNRRRVVWK 145
            D++D+++N    + R  V WK
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWK 1552


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 125  DSFDYKKNDCVCKNRRRVVWK 145
            D++D+++N    + R  V WK
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWK 1552


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 312 LGRHLKDPDDYTARRSSLQGGFCENDHGG 340
           +GRH +   ++ A      GG C   H G
Sbjct: 331 MGRHCESKVNFCATSPCQNGGVCTTIHAG 359


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 393 DDIDELRSGKIKSQKQNKNTDAANDSDEEPAD 424
           DD D    G+IKS++  K+ D  + +D++  D
Sbjct: 179 DDTD--MHGRIKSERNGKDLDDDDMNDDDRKD 208


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 182 KGCEFATDLICYNNISRELEKAGTKGWIAGWGSMNTFREGVYRRQDVHIPENSKCLQEAK 241
           + C F+ +    N+    +       +       +T ++G+Y      I E S  L E K
Sbjct: 56  ESCRFSINQPYLNHFDNSVTPMVNHDFTQHLSQYDTCQQGIYPENKTLINETSLQLDENK 115

Query: 242 VCIMDNESCA 251
           +   D++S A
Sbjct: 116 LDKKDDDSPA 125


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,011
Number of Sequences: 317
Number of extensions: 4787
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 485
length of database: 114,650
effective HSP length: 59
effective length of query: 426
effective length of database: 95,947
effective search space: 40873422
effective search space used: 40873422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)