Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002284-TA|BGIBMGA002284-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 30 0.63
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 30 0.63
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 29 1.5
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 29 1.9
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su... 28 2.5
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 28 3.4
SPBC21C3.16c |spt4||transcription elongation factor complex subu... 27 5.9
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 7.7
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 7.7
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 7.7
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 395 IDELRSGKIKSQKQNKNTDAANDSDEEPADKKARAGKTKE 434
++E+ ++K K+ + ++ ND EE DKK R K KE
Sbjct: 109 VEEVLEARLKGDKEARGQNS-NDQPEESDDKKKRKKKVKE 147
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 30.3 bits (65), Expect = 0.63
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 394 DIDELRSGKIKSQKQNKNTDAANDSDEEPAD 424
++DELR ++S+K+N+ D +NDSD+E +
Sbjct: 6 NLDELRKKALESKKKNEE-DESNDSDKEDGE 35
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 LVPLSVVLEHATTELSKASNQT-TSRNGTSKANEDEGWEFENTTVVDTRRILYSKDVQV 65
L PL +L+ + +++S N T T N N W + V ++LYS+DV++
Sbjct: 206 LQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEI 264
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 392 VDDIDELRSGKIKSQKQNKNTDAANDSDEEPADKKARAGKTKED 435
+++ +E S S KQ K A ++ EE K+AR KTKED
Sbjct: 456 MENEEERTSDSKSSAKQGKGNGRAKETPEE---KRARKKKTKED 496
>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 270
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 58 LYSKDVQVGNRPYMVYLQLTKESAKAHKYRGW-LCGGVI 95
+YS ++ + N ++YL+ TKE+ K + RGW + GVI
Sbjct: 182 VYS-EIPLSNATSLLYLENTKETEKLAEERGWDIRDGVI 219
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 1 MTRITLFLVPL-SVVLEHATTELSKASNQTTSRNGTSKANEDEG 43
M R F PL ++H +T +K TTS + ANE +G
Sbjct: 1 MKRRATFQCPLIESTIKHQSTNYTKTETATTSHEVSENANEHKG 44
>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
Spt4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 205 TKGWIAGWGSMNTFREGVY 223
T+ W+A W ++TF G+Y
Sbjct: 55 TESWVARWQRIDTFTPGIY 73
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 7.7
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 195 NISRELEKAGTKGWIAGWGSMNTFREGVYRRQDVHIPENSKCLQEAKVCIM-DNESCAKK 253
NI L +AG +I ++ G++ + PE+SK + KV +M +N S +K
Sbjct: 498 NIVEVLMQAGASAYIPNRAGLSVANFGIFVENALKQPEDSK---QTKVSLMSENLSSKEK 554
Query: 254 WA----QKFRNII 262
A QK R+II
Sbjct: 555 TAVPPRQKSRDII 567
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 389 NKDVDDIDELRSGKIKSQKQNKNTDAANDSDEEPADKKARAGKTKED 435
++DVD +DE +SG+ + + ND D E +K +T ++
Sbjct: 46 DEDVDAVDE-KSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKE 91
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 395 IDELRS-GKIKSQKQNKNTDAANDSDEEPADKKARAGKTKE 434
++EL++ GK K ++ K D +E+P KK + KE
Sbjct: 209 VEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKE 249
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,154
Number of Sequences: 5004
Number of extensions: 93997
Number of successful extensions: 281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 11
length of query: 485
length of database: 2,362,478
effective HSP length: 75
effective length of query: 410
effective length of database: 1,987,178
effective search space: 814742980
effective search space used: 814742980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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