GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002284-TA|BGIBMGA002284-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629...    31   2.7  
05_04_0158 + 18613265-18615304                                         30   3.6  
12_01_0872 + 8326873-8327475,8328246-8328575                           30   4.7  
11_06_0710 - 26492093-26493460                                         30   4.7  
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409...    29   6.3  
09_01_0019 + 403078-404211                                             29   8.3  
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    29   8.3  

>08_02_0850 +
           21862110-21862394,21862555-21862723,21862901-21862965,
           21863632-21863905,21863998-21864145,21864237-21864346,
           21864440-21864495,21864568-21864624,21864733-21864876,
           21865304-21865351
          Length = 451

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 138 NRRRVVWKCIPKN--YKFDFQDSIKWSSNDIAIVKVDKPFKFGVMEKGCEFATDLICYNN 195
           N+  V+  C  K   Y F  +DS+      +  + +DK  K G++ KG   A +++  N+
Sbjct: 323 NKNLVIEDCDTKQSIYVFGCKDSVLQVKGKVNNITIDKCSKMGLLFKGVVAACEIVNCNS 382

Query: 196 ISRELE 201
           I  + E
Sbjct: 383 IEVQCE 388


>05_04_0158 + 18613265-18615304
          Length = 679

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 399 RSGKIKSQKQNKNTDAANDSDEEPADKKARAGKTKEDA 436
           ++G IK +   +  + A +  +E  +++ +AGKTK DA
Sbjct: 552 KAGNIKQELVKEQQEKAGNIKQESGEEQEKAGKTKHDA 589


>12_01_0872 + 8326873-8327475,8328246-8328575
          Length = 310

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)

Query: 85  KYRGWLCGGVIVDQYYVLTSAACVEDADRFYIVSGTTKYV 124
           +Y GWL G V  D +Y  T++AC+ D +   + SG T+ V
Sbjct: 131 EYSGWLRGRV-ADPHYWETTSACLRDGN---VCSGMTRLV 166


>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 390 KDVDDIDELRSGKIKSQKQNKNTDAANDSDEEPADKKARAGKTKED 435
           +D  D  E  S K K +K+ K+   ++D D++ A+KK++      D
Sbjct: 123 EDGTDDGEDESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSD 168


>02_04_0258 +
           21339682-21339806,21340635-21340730,21340905-21340980,
           21341085-21341143,21341280-21341380,21341447-21341773,
           21341861-21342021,21342100-21342303,21342735-21342966,
           21343629-21344239
          Length = 663

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 135 VCKNRRRVVWKCIPKNYKFDFQDSIKWSSNDIAIVKVDKPFKFGVMEKGCEFATDLICYN 194
           + ++  R+  KC  K  K + Q  ++   ND+  + + +  K   ++K C  + + I   
Sbjct: 40  LARSECRLPQKCYAKFSKVNHQHFVELKGNDLTTIVIVEALKVDSLQKLCS-SLEPILRR 98

Query: 195 NISRELEKAGTK 206
            +S E+E+A  K
Sbjct: 99  VVSEEVERALAK 110


>09_01_0019 + 403078-404211
          Length = 377

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 393 DDIDELRSGKIKSQKQNKNTDAANDSDEEPADKKARAGKTKED 435
           DD++E RS   K + + K  + +++  E  +DKK R  K+++D
Sbjct: 241 DDLEEERSKDKKKKSRRKRHERSDEDSESDSDKK-RHRKSRKD 282


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 192 CYNNISRELEKAGTKGWIAG 211
           CY N  R+LE     GWIAG
Sbjct: 849 CYQNGDRDLEGTSQSGWIAG 868


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,425,480
Number of Sequences: 37544
Number of extensions: 551808
Number of successful extensions: 1226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 12
length of query: 485
length of database: 14,793,348
effective HSP length: 85
effective length of query: 400
effective length of database: 11,602,108
effective search space: 4640843200
effective search space used: 4640843200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)