GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002283-TA|BGIBMGA002283-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (325 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   4.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   4.0  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 212 INYSDEEETRREAQSEKIPTNLVMHSYY 239
           ++Y +     R  Q+   P N  MHS+Y
Sbjct: 2   VSYYNSTNMYRHQQAVAAPANAPMHSWY 29


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 212 INYSDEEETRREAQSEKIPTNLVMHSYY 239
           ++Y +     R  Q+   P N  MHS+Y
Sbjct: 2   VSYYNSTNMYRHQQAVAAPANAPMHSWY 29


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 205 KYVDCQDINYSDEEETRREAQSEK 228
           KY D Q I Y DEE    + Q  K
Sbjct: 319 KYKDDQWIGYDDEESVALKVQFAK 342


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 234 VMHSYYNDTMANNVTDNGAGARRYAP 259
           V+   Y+D +     D GAGA  Y P
Sbjct: 3   VLQKNYDDGIHPGYMDGGAGAGLYEP 28


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,408
Number of Sequences: 317
Number of extensions: 4058
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 325
length of database: 114,650
effective HSP length: 57
effective length of query: 268
effective length of database: 96,581
effective search space: 25883708
effective search space used: 25883708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)