GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002283-TA|BGIBMGA002283-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    29   1.2  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    28   2.1  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    28   2.1  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    27   4.8  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   6.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   8.4  

>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 100 DGFDFSRRIRGCDFIPKPICYNNQSQTLENPGTIVSIAGWG 140
           DG D S+ +R   F      YNN ++T+E+P   V   GWG
Sbjct: 49  DGEDISKWVRKVVFKLHDT-YNNPTRTIESPPFEVIETGWG 88


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 124 SQTLENPGTI--VSIAGWGTTAKYNDWVNRRKGNQQDLLESHVEII 167
           S  ++NP  +   +++G G T +  +W+++RK  +   L   +E++
Sbjct: 2   SLKVQNPNNVRVYTVSGEGVTQRLPNWISKRKLKKDYALSHRIELL 47


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 36  AEHFYIVSGTYKYSDEDDRYSNPCIKNGAKKAIWKCIPK-NYVFD---GHENDNIRWMNN 91
           +E F+++ G YK +    + S  C K+   + + + +P  + + D   G  +      NN
Sbjct: 503 SEMFHVLKGFYKAASAFSKNSYSCFKSALLRRLIQQLPSISSIIDHFLGMFDQKEAENNN 562

Query: 92  DIAIVKVEDGFDFSRRIRGCDF 113
            + + K  D FD S      D+
Sbjct: 563 KVDMFKDIDNFDLSEEPNDVDY 584


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 160 LESHVEIISKTKCKRRWGSRYTNIIDNYMICTKDIGQTMSEICNEKYVDCQDINYSDE-E 218
           L++ +  IS TK       +     +NY++ T    +++  + ++ ++     NY +E  
Sbjct: 356 LQAMIPSISNTKNAESSSQKAVRTYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEII 415

Query: 219 ETRREAQSEKIPTN 232
           E    A S K  TN
Sbjct: 416 EKVDSANSNKNATN 429


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 57  NPCIKNGAKKAIWKCIPKNYVFDGHENDNIR 87
           NP +K+   K +WK    + ++  HEN  +R
Sbjct: 481 NPAVKDRINKIVWKNGNPDRLYSLHENGMVR 511


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 252  AGARRYA---PMADGGFCENDHGG-PLVYG---TGVNSIVIGIISACLV 293
            A  +RY    P A    C  D+ G  L+ G   TG    +IGIISA LV
Sbjct: 1123 AAMKRYQVNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLV 1171


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,689
Number of Sequences: 5004
Number of extensions: 79233
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 6
length of query: 325
length of database: 2,362,478
effective HSP length: 73
effective length of query: 252
effective length of database: 1,997,186
effective search space: 503290872
effective search space used: 503290872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)