GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002283-TA|BGIBMGA002283-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0294 - 14745886-14745944,14745981-14746036,14746401-147464...    31   0.95 
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711...    29   6.7  

>01_03_0294 -
           14745886-14745944,14745981-14746036,14746401-14746452,
           14746922-14747303
          Length = 182

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 216 DEEETRREAQSEKIPTNLVMHSYYNDTMANNVTDNGAGARRYAPMADGG----FCENDHG 271
           +EEE RRE  +E + T  V+ + Y+D        +   A R     DGG    FC  D G
Sbjct: 55  EEEEKRREDAAE-VRTGRVVEALYDDGFGGVTVKDYFAAARAVSSDDGGPPRWFCPVDAG 113

Query: 272 GPLV 275
            P V
Sbjct: 114 RPAV 117


>03_05_0190 -
           21770610-21770641,21770741-21770811,21771058-21771168,
           21771249-21771500,21771584-21772086,21772188-21773234,
           21773361-21773768,21773814-21773956,21774020-21774053
          Length = 866

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 60  IKNGAKKAIWKCIPKNYVF-DGHE---NDNIRWMNNDIAIVKVEDGFD------FSRRIR 109
           + NG K+ +WK + K + F DG E   +D +   N+   I + +   +      F  R+ 
Sbjct: 170 VSNGDKEVLWKELKKIFQFPDGSEAAWDDFLTLKNSPEEIQRSQKYAELAKKNKFPHRLG 229

Query: 110 GCDFIPKPICYNNQSQTLENPGTIVSIAGWGTTAKYNDWVNRR 152
              + PK   +  + + +   G  V +  W  T +  +WV  R
Sbjct: 230 STGYAPKVEQWTKEEEEMRKKGQPVPMEEW--TQRSRNWVRAR 270


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,903
Number of Sequences: 37544
Number of extensions: 492866
Number of successful extensions: 884
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 2
length of query: 325
length of database: 14,793,348
effective HSP length: 82
effective length of query: 243
effective length of database: 11,714,740
effective search space: 2846681820
effective search space used: 2846681820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)