GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002282-TA|BGIBMGA002282-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.5  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   8.2  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   8.2  

>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 230 GTRRVISPEKLELHSAHHNVSGRRNVDSGGFCENDHGGPLTYGTGVNSVVIGIISACL 287
           G+  +IS    +LH  HHN +    V   G   ++  G +  G   N   +G IS CL
Sbjct: 423 GSAPLISLSSKQLHPRHHNTAS--IVVQVGVSLSNTFGSICGGAIYNITTVGFISLCL 478


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 269 LTYGTG--VNSVVIGIISACLVKQRSNTCYGPFLYTSVYKNRVLISCAIYKDS 319
           L YG+   ++S ++ + ++C +KQ SN  YG FL   +    VLI   ++K +
Sbjct: 797 LYYGSDDYIHSPILQVFASCWLKQNSN--YG-FLNEDIIVKIVLILIDLHKST 846


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 69  NPCIKNGAKKAIWKCIPRNYVFDGHENDNIR 99
           NP +K+   K +WK    + ++  HEN  +R
Sbjct: 481 NPAVKDRINKIVWKNGNPDRLYSLHENGMVR 511


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,851
Number of Sequences: 5004
Number of extensions: 84360
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 3
length of query: 320
length of database: 2,362,478
effective HSP length: 73
effective length of query: 247
effective length of database: 1,997,186
effective search space: 493304942
effective search space used: 493304942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)