GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002282-TA|BGIBMGA002282-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0950 - 9463148-9464358,9465326-9465644                           29   5.0  
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    29   5.0  
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594...    29   6.6  

>12_01_0950 - 9463148-9464358,9465326-9465644
          Length = 509

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 229 DGTRRVISPEKLELHSAHHNVSGRRNVDSGGFCENDHGGPLTYGTGVNS 277
           DG R     +K E  SA    +GRR  +S   C    GG L+ G GV S
Sbjct: 69  DG-RTAADGQKEEEESAGRRGAGRRWAESTAACSVGGGGGLSVGIGVGS 116


>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 164 KPTQNLLQSEVEIINKDRCKRRWGKRYYNIIDNYMICSKDNAPVLNEVGREKYVD 218
           K  + +L+  V+  +  +   RW  R+++ +D Y I S+ + P L+EVG   + D
Sbjct: 88  KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI-SRRSLPQLSEVGLSCFRD 141


>03_05_0394 +
           23758392-23758625,23759097-23759273,23759349-23759453,
           23759640-23759681,23759763-23759960,23760037-23760165,
           23760248-23760377,23761119-23761179,23761241-23761322,
           23761402-23761653
          Length = 469

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 135 YSTNLEEPGVRANIAGWGTTKHYDGSEGGKPTQNLLQS-EVEIINKD 180
           Y   LE P V   +  +G   +YDG E G   QN+ +S  V  +N D
Sbjct: 208 YQAYLENPSVVPMLINYG---YYDGVELGNTNQNMYKSAAVNYVNND 251


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,098
Number of Sequences: 37544
Number of extensions: 528354
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 4
length of query: 320
length of database: 14,793,348
effective HSP length: 82
effective length of query: 238
effective length of database: 11,714,740
effective search space: 2788108120
effective search space used: 2788108120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)