GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002282-TA|BGIBMGA002282-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (320 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    30   2.5  
AF016440-9|AAK68353.2|  287|Caenorhabditis elegans Hypothetical ...    29   3.3  
U58749-6|AAU05599.2|  276|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 19/120 (15%)

Query: 88  YVFDGHENDNIRWMNNDIAIVKVDEEFDFTRRVRGCDFIPKPVAYNNYSTNLEEPGVRAN 147
           Y+  G+ N      +NDIA++++  +        G     KPV   +  + L +      
Sbjct: 111 YIHSGYNNQTA---DNDIALLRISSDLSKL----GI----KPVCLVHDDSKLLKQYKNGV 159

Query: 148 IAGWGTTKHYDGSEGGK--PTQNLLQSEVEIINKDRCKRRWGKRYYNI----IDNYMICS 201
           + G+G T   D S   K   +Q L  + V II+ D C + W  R+ ++    I  Y IC+
Sbjct: 160 VIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTW--RFLSLLSVKITGYQICA 217


>AF016440-9|AAK68353.2|  287|Caenorhabditis elegans Hypothetical
           protein F29G9.7 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 54  YKYVNRHDERDDRFNNPCIKNGAKKAIWKCIPRN--YVFDGHENDNIRWMNNDIAIVKVD 111
           +++  RH  R   F+   +K+G     W    RN  Y+ D HEN  +     D+ ++K D
Sbjct: 191 HRFEIRHTSRGG-FDLEVLKSGLNVKKWNKNLRNGCYIMDSHENPYLLDTRKDLDVIKSD 249


>U58749-6|AAU05599.2|  276|Caenorhabditis elegans Hypothetical
          protein B0496.3c protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 52 GTYKYVNRHDERDDRFNNPCIKNGAKKAIWK 82
          G Y YVN HD  + R N    K+G  ++I K
Sbjct: 54 GDYSYVNYHDSSNGRSNITLEKDGQPRSILK 84


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
            B0496.3a protein.
          Length = 1551

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 52   GTYKYVNRHDERDDRFNNPCIKNGAKKAIWK 82
            G Y YVN HD  + R N    K+G  ++I K
Sbjct: 1329 GDYSYVNYHDSSNGRSNITLEKDGQPRSILK 1359


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
            B0496.3b protein.
          Length = 1592

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 52   GTYKYVNRHDERDDRFNNPCIKNGAKKAIWK 82
            G Y YVN HD  + R N    K+G  ++I K
Sbjct: 1370 GDYSYVNYHDSSNGRSNITLEKDGQPRSILK 1400


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,698
Number of Sequences: 27539
Number of extensions: 472270
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 6
length of query: 320
length of database: 12,573,161
effective HSP length: 81
effective length of query: 239
effective length of database: 10,342,502
effective search space: 2471857978
effective search space used: 2471857978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)