GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002281-TA|BGIBMGA002281-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (241 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1053 - 33778057-33778278,33778454-33778546,33778628-337787...    31   0.84 
04_04_1256 + 32124826-32124946,32125388-32125554,32125731-321259...    29   3.4  
02_05_0875 + 32393496-32393881,32395297-32395397,32395493-323956...    29   4.5  

>02_05_1053 -
           33778057-33778278,33778454-33778546,33778628-33778700,
           33779130-33779204,33779768-33779829,33780282-33780341,
           33780469-33780508,33780766-33781043
          Length = 300

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 1   MRWMANDIAVVKVEDDFNFQKRVKGCDYVPKMIAYNNQSEELEKPGT 47
           +R   ND+  +  E+  NFQ+R      VP  IA   + +EL K  T
Sbjct: 218 LRRFQNDVGEMATEESKNFQERNIYLVLVPNKIAIQKEQDELNKKDT 264


>04_04_1256 +
           32124826-32124946,32125388-32125554,32125731-32125934,
           32126063-32126222,32126379-32126592,32126707-32126854
          Length = 337

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 13  VEDDFNFQKRVKGCDYVPKMIA-YNNQSEELEKPGTVASIAG 53
           +++D +F + V GCDY   + A  N QSE  EK    A + G
Sbjct: 65  LDEDGSFDEAVNGCDYAFLVAAPVNLQSENPEKEMIEAGVQG 106


>02_05_0875 +
           32393496-32393881,32395297-32395397,32395493-32395674,
           32396135-32396233,32396311-32396403
          Length = 286

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 37  NQSEELEK--PGTVASIAGWGSTQKFSDGRAIGRTNT-NSPSLLETDVVLISKKN 88
           N  +++EK  PGT+ +I  W    K  DG+   R    N P+  E  + +I + N
Sbjct: 213 NDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANRFGLGNKPTSKEYALKVIEETN 267


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,456,509
Number of Sequences: 37544
Number of extensions: 310506
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 3
length of query: 241
length of database: 14,793,348
effective HSP length: 80
effective length of query: 161
effective length of database: 11,789,828
effective search space: 1898162308
effective search space used: 1898162308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)